Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029039-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_029040-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_029041-T1 | |
LLU|FUN_029042-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_029043-T1 | |
LLU|FUN_029044-T1 | |
LLU|FUN_029045-T1 | |
LLU|FUN_029046-T1 | DEDICATOR OF CYTOKINESIS DOCK |
LLU|FUN_029047-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_029048-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 |
LLU|FUN_029049-T1 | LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029050-T1 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 |
LLU|FUN_029051-T1 | ASTEROID PROTEIN |
LLU|FUN_029052-T1 | |
LLU|FUN_029053-T1 | UNCHARACTERIZED |
LLU|FUN_029054-T1 | ASTEROID PROTEIN |
LLU|FUN_029055-T1 | ELONGATION FACTOR TU-RELATED |
LLU|FUN_029056-T1 | 5'->3' EXORIBONUCLEASE |
LLU|FUN_029057-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
LLU|FUN_029058-T1 | |
LLU|FUN_029059-T1 | APONTIC |
LLU|FUN_029060-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
LLU|FUN_029061-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
LLU|FUN_029062-T1 | |
LLU|FUN_029063-T1 | TRANSCRIPTION FACTOR CASTOR PROTEIN MING -RELATED |
LLU|FUN_029064-T1 | |
LLU|FUN_029065-T1 | |
LLU|FUN_029066-T1 | |
LLU|FUN_029067-T1 | |
LLU|FUN_029068-T1 | MORTALITY FACTOR 4-LIKE PROTEIN |
LLU|FUN_029069-T1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A CAF-1 SUBUNIT A |
LLU|FUN_029070-T1 | |
LLU|FUN_029071-T1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
LLU|FUN_029072-T1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
LLU|FUN_029073-T1 | MOLYBDOPTERIN SYNTHASE RELATED |
LLU|FUN_029074-T1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
LLU|FUN_029075-T1 | CONTACTIN 5 |
LLU|FUN_029076-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_029077-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_029078-T1 | |
LLU|FUN_029079-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_029080-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_029081-T1 | |
LLU|FUN_029082-T1 | GLYCOSYLTRANSFERASE |
LLU|FUN_029083-T1 | |
LLU|FUN_029084-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_029085-T1 | |
LLU|FUN_029086-T1 | |
LLU|FUN_029087-T1 | TITIN |
LLU|FUN_029088-T1 |