Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_028736-T1 | |
LLU|FUN_028737-T1 | |
LLU|FUN_028738-T1 | ANKYRIN REPEAT AND SOCS BOX PROTEIN 17 |
LLU|FUN_028739-T1 | |
LLU|FUN_028740-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
LLU|FUN_028741-T1 | |
LLU|FUN_028742-T1 | |
LLU|FUN_028743-T1 | |
LLU|FUN_028744-T1 | |
LLU|FUN_028745-T1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
LLU|FUN_028746-T1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
LLU|FUN_028747-T1 | |
LLU|FUN_028748-T1 | |
LLU|FUN_028749-T1 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_028750-T1 | FANCONI ANEMIA GROUP B PROTEIN |
LLU|FUN_028751-T1 | SPORE COAT PROTEIN SP85 |
LLU|FUN_028752-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_028753-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_028754-T1 | HISTONE H1 |
LLU|FUN_028755-T1 | HISTONE H1 |
LLU|FUN_028756-T1 | |
LLU|FUN_028757-T1 | |
LLU|FUN_028758-T1 | HISTONE H1 |
LLU|FUN_028759-T1 | |
LLU|FUN_028760-T1 | |
LLU|FUN_028761-T1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
LLU|FUN_028762-T1 | |
LLU|FUN_028763-T1 | ACID AMIDASE |
LLU|FUN_028764-T1 | HEAT SHOCK TRANSCRIPTION FACTOR |
LLU|FUN_028765-T1 | FANCONI ANEMIA GROUP F PROTEIN FANCF |
LLU|FUN_028766-T1 | UNCHARACTERIZED |
LLU|FUN_028767-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_028768-T1 | ARFAPTIN-RELATED |
LLU|FUN_028769-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2A |
LLU|FUN_028770-T1 | BARDET-BIEDL SYNDROME 7 PROTEIN |
LLU|FUN_028771-T1 | |
LLU|FUN_028772-T1 | |
LLU|FUN_028773-T1 | YEAST SPT2-RELATED |
LLU|FUN_028774-T1 | OPTIC ATROPHY 3 PROTEIN OPA3 |
LLU|FUN_028775-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_028776-T1 | |
LLU|FUN_028777-T1 | SYNAPTOTAGMIN 14, ISOFORM D |
LLU|FUN_028778-T1 | |
LLU|FUN_028780-T1 | RNA POLYMERASE II-ASSOCIATED PROTEIN 1 |
LLU|FUN_028781-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
LLU|FUN_028782-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
LLU|FUN_028783-T1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1 |
LLU|FUN_028784-T1 | UNCHARACTERIZED |
LLU|FUN_028785-T1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
LLU|FUN_028786-T1 | PROTEASOME SUBUNIT ALPHA/BETA |