About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028736-T1
LLU|FUN_028737-T1
LLU|FUN_028738-T1ANKYRIN REPEAT AND SOCS BOX PROTEIN 17
LLU|FUN_028739-T1
LLU|FUN_028740-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
LLU|FUN_028741-T1
LLU|FUN_028742-T1
LLU|FUN_028743-T1
LLU|FUN_028744-T1
LLU|FUN_028745-T1TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER
LLU|FUN_028746-T1PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
LLU|FUN_028747-T1
LLU|FUN_028748-T1
LLU|FUN_028749-T1MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_028750-T1FANCONI ANEMIA GROUP B PROTEIN
LLU|FUN_028751-T1SPORE COAT PROTEIN SP85
LLU|FUN_028752-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
LLU|FUN_028753-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
LLU|FUN_028754-T1HISTONE H1
LLU|FUN_028755-T1HISTONE H1
LLU|FUN_028756-T1
LLU|FUN_028757-T1
LLU|FUN_028758-T1HISTONE H1
LLU|FUN_028759-T1
LLU|FUN_028760-T1
LLU|FUN_028761-T1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
LLU|FUN_028762-T1
LLU|FUN_028763-T1ACID AMIDASE
LLU|FUN_028764-T1HEAT SHOCK TRANSCRIPTION FACTOR
LLU|FUN_028765-T1FANCONI ANEMIA GROUP F PROTEIN FANCF
LLU|FUN_028766-T1UNCHARACTERIZED
LLU|FUN_028767-T1AMINO ACID TRANSPORTER
LLU|FUN_028768-T1ARFAPTIN-RELATED
LLU|FUN_028769-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2A
LLU|FUN_028770-T1BARDET-BIEDL SYNDROME 7 PROTEIN
LLU|FUN_028771-T1
LLU|FUN_028772-T1
LLU|FUN_028773-T1YEAST SPT2-RELATED
LLU|FUN_028774-T1OPTIC ATROPHY 3 PROTEIN OPA3
LLU|FUN_028775-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_028776-T1
LLU|FUN_028777-T1SYNAPTOTAGMIN 14, ISOFORM D
LLU|FUN_028778-T1
LLU|FUN_028780-T1RNA POLYMERASE II-ASSOCIATED PROTEIN 1
LLU|FUN_028781-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
LLU|FUN_028782-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
LLU|FUN_028783-T1TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1
LLU|FUN_028784-T1UNCHARACTERIZED
LLU|FUN_028785-T1SOLUTE CARRIER FAMILY 35 MEMBER B
LLU|FUN_028786-T1PROTEASOME SUBUNIT ALPHA/BETA
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