About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028585-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
LLU|FUN_028586-T1
LLU|FUN_028587-T1FERREDOXIN/ADRENODOXIN
LLU|FUN_028588-T1FLAGELLAR RADIAL SPOKE PROTEIN 3
LLU|FUN_028589-T1FLAGELLAR RADIAL SPOKE PROTEIN 3
LLU|FUN_028590-T1DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER
LLU|FUN_028591-T1PROTEIN CBG19621
LLU|FUN_028592-T1CDC37-RELATED
LLU|FUN_028593-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
LLU|FUN_028594-T1IST1 FAMILY MEMBER
LLU|FUN_028595-T1SEC63 DOMAIN-CONTAINING
LLU|FUN_028596-T1
LLU|FUN_028597-T1
LLU|FUN_028598-T1
LLU|FUN_028599-T1
LLU|FUN_028600-T1
LLU|FUN_028601-T1
LLU|FUN_028602-T1
LLU|FUN_028603-T1
LLU|FUN_028604-T1
LLU|FUN_028605-T1
LLU|FUN_028606-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
LLU|FUN_028607-T1DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
LLU|FUN_028608-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
LLU|FUN_028609-T1OUTER DENSE FIBER OF SPERM TAILS 2
LLU|FUN_028610-T1TNF RECEPTOR ASSOCIATED FACTOR
LLU|FUN_028611-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
LLU|FUN_028612-T1INNEXIN
LLU|FUN_028613-T1GALACTOSE-3-O-SULFOTRANSFERASE
LLU|FUN_028614-T1MUCIN 4-RELATED
LLU|FUN_028615-T1MULTI-COPPER OXIDASE
LLU|FUN_028616-T1
LLU|FUN_028617-T1
LLU|FUN_028618-T1
LLU|FUN_028619-T1
LLU|FUN_028620-T1CONNECTIVE TISSUE GROWTH FACTOR-RELATED
LLU|FUN_028622-T1
LLU|FUN_028623-T1
LLU|FUN_028624-T1
LLU|FUN_028625-T1
LLU|FUN_028626-T1
LLU|FUN_028627-T1
LLU|FUN_028628-T1-
LLU|FUN_028629-T1
LLU|FUN_028630-T1
LLU|FUN_028631-T1
LLU|FUN_028632-T1
LLU|FUN_028633-T1HEPARAN SULFATE SULFOTRANSFERASE
LLU|FUN_028634-T1HEPARAN SULFATE SULFOTRANSFERASE
LLU|FUN_028635-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
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