About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028429-T1RIBOSOMAL PROTEIN S6 KINASE
LLU|FUN_028430-T1CALMODULIN-LYSINE N-METHYLTRANSFERASE
LLU|FUN_028431-T13-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
LLU|FUN_028432-T1
LLU|FUN_028433-T1
LLU|FUN_028434-T1PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1
LLU|FUN_028435-T1ELONGATION FACTOR 1-GAMMA
LLU|FUN_028436-T1
LLU|FUN_028437-T1GLYCOGEN PHOSPHORYLASE
LLU|FUN_028438-T1
LLU|FUN_028439-T1
LLU|FUN_028440-T1
LLU|FUN_028441-T1TRANSCRIPTION INITIATION FACTOR IA RRN3
LLU|FUN_028442-T1VACUOLAR PROTON ATPASES
LLU|FUN_028443-T1COLLAGEN ALPHA
LLU|FUN_028444-T1VACUOLAR PROTON ATPASES
LLU|FUN_028445-T1
LLU|FUN_028446-T1KRAB AND ZINC FINGER DOMAIN-CONTAINING
LLU|FUN_028447-T1KRAB AND ZINC FINGER DOMAIN-CONTAINING
LLU|FUN_028448-T1
LLU|FUN_028449-T1
LLU|FUN_028450-T1
LLU|FUN_028451-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
LLU|FUN_028452-T1PREFOLDIN SUBUNIT 5
LLU|FUN_028453-T1
LLU|FUN_028454-T1
LLU|FUN_028455-T1
LLU|FUN_028456-T1PROTON CHANNEL OTOP
LLU|FUN_028457-T1
LLU|FUN_028458-T1
LLU|FUN_028459-T1HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_028460-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 17
LLU|FUN_028461-T1
LLU|FUN_028462-T1LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
LLU|FUN_028463-T1FI20236P1
LLU|FUN_028464-T1
LLU|FUN_028465-T1RIBOSOME BIOGENESIS PROTEIN BRIX
LLU|FUN_028466-T1
LLU|FUN_028467-T1
LLU|FUN_028468-T1
LLU|FUN_028469-T1
LLU|FUN_028470-T1SISTER CHROMATID COHESION PROTEIN DCC1-RELATED
LLU|FUN_028471-T1DEP DOMAIN PROTEIN
LLU|FUN_028472-T1ETHANOLAMINEPHOSPHOTRANSFERASE
LLU|FUN_028473-T1
LLU|FUN_028474-T1
LLU|FUN_028475-T1
LLU|FUN_028476-T1
LLU|FUN_028477-T1TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1
LLU|FUN_028478-T1
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