About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028158-T1
LLU|FUN_028159-T1CARNITINE O-ACYLTRANSFERASE
LLU|FUN_028160-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_028161-T1
LLU|FUN_028162-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_028163-T1
LLU|FUN_028164-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
LLU|FUN_028165-T1CUB DOMAIN-CONTAINING PROTEIN
LLU|FUN_028166-T1UNCHARACTERIZED
LLU|FUN_028167-T1
LLU|FUN_028168-T1SPONDIN
LLU|FUN_028177-T1
LLU|FUN_028183-T1
LLU|FUN_028187-T1
LLU|FUN_028188-T1
LLU|FUN_028189-T1HEPARAN SULFATE SULFOTRANSFERASE
LLU|FUN_028190-T1ATP-BINDING CASSETTE SUB-FAMILY C
LLU|FUN_028191-T1
LLU|FUN_028192-T1ATP-BINDING CASSETTE SUB-FAMILY C
LLU|FUN_028193-T1
LLU|FUN_028195-T1
LLU|FUN_028196-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
LLU|FUN_028197-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_028198-T1ARM REPEAT SUPERFAMILY PROTEIN
LLU|FUN_028199-T1
LLU|FUN_028200-T1
LLU|FUN_028201-T1GUANYLYL CYCLASE
LLU|FUN_028202-T1GUANYLYL CYCLASE
LLU|FUN_028203-T1
LLU|FUN_028204-T1
LLU|FUN_028205-T1SLL0310 PROTEIN
LLU|FUN_028206-T1SEQUESTOSOME 1-RELATED
LLU|FUN_028207-T1
LLU|FUN_028208-T1STEROL REGULATORY ELEMENT-BINDING PROTEIN
LLU|FUN_028210-T1DEADENYLATION COMPLEX SUBUNIT PAN3
LLU|FUN_028211-T1UNCHARACTERIZED
LLU|FUN_028212-T1HSDA/SDA1-RELATED
LLU|FUN_028213-T1
LLU|FUN_028214-T1
LLU|FUN_028215-T1
LLU|FUN_028216-T1STAGA COMPLEX 65 SUBUNIT GAMMA
LLU|FUN_028217-T1TETRATRICOPEPTIDE REPEAT PROTEIN 29
LLU|FUN_028218-T1TETRATRICOPEPTIDE REPEAT PROTEIN 29
LLU|FUN_028219-T1
LLU|FUN_028220-T1
LLU|FUN_028221-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10
LLU|FUN_028222-T1TRAF-TYPE ZINC FINGER PROTEIN-RELATED
LLU|FUN_028223-T1UNCHARACTERIZED
LLU|FUN_028224-T1CALCIUM-TRANSPORTING ATPASE
LLU|FUN_028225-T1
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