Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_028057-T1 | UNC-93 RELATED |
LLU|FUN_028058-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
LLU|FUN_028059-T1 | PROTEIN PHOSPHATASE 2C |
LLU|FUN_028060-T1 | RGD1565685 PROTEIN |
LLU|FUN_028061-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_028062-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_028063-T1 | |
LLU|FUN_028064-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_028065-T1 | |
LLU|FUN_028066-T1 | UNCHARACTERIZED |
LLU|FUN_028067-T1 | PERIAXIN-LIKE |
LLU|FUN_028068-T1 | |
LLU|FUN_028069-T1 | |
LLU|FUN_028070-T1 | ZINC FINGER PROTEIN ZIC AND GLI |
LLU|FUN_028071-T1 | |
LLU|FUN_028072-T1 | ZINC FINGER PROTEIN ZIC AND GLI |
LLU|FUN_028073-T1 | |
LLU|FUN_028074-T1 | |
LLU|FUN_028075-T1 | |
LLU|FUN_028076-T1 | MUCIN 4-RELATED |
LLU|FUN_028077-T1 | |
LLU|FUN_028078-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
LLU|FUN_028079-T1 | |
LLU|FUN_028080-T1 | |
LLU|FUN_028081-T1 | |
LLU|FUN_028082-T1 | G-PROTEIN COUPLED RECEPTOR 158-RELATED |
LLU|FUN_028083-T1 | |
LLU|FUN_028084-T1 | MALATE DEHYDROGENASE |
LLU|FUN_028086-T1 | CYSTINOSIN |
LLU|FUN_028087-T1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_028088-T1 | |
LLU|FUN_028089-T1 | |
LLU|FUN_028090-T1 | 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL |
LLU|FUN_028091-T1 | CYSTINOSIN |
LLU|FUN_028092-T1 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT |
LLU|FUN_028093-T1 | METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE C PROTEIN |
LLU|FUN_028094-T1 | METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE C PROTEIN |
LLU|FUN_028095-T1 | |
LLU|FUN_028096-T1 | CYTOCHROME P450 FAMILY 4 |
LLU|FUN_028097-T1 | METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE C PROTEIN |
LLU|FUN_028098-T1 | |
LLU|FUN_028099-T1 | |
LLU|FUN_028100-T1 | CYTOCHROME P450 FAMILY 4 |
LLU|FUN_028101-T1 | |
LLU|FUN_028102-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
LLU|FUN_028103-T1 | |
LLU|FUN_028104-T1 | |
LLU|FUN_028105-T1 | |
LLU|FUN_028106-T1 | |
LLU|FUN_028107-T1 |