Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_027755-T1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT |
LLU|FUN_027756-T1 | |
LLU|FUN_027757-T1 | |
LLU|FUN_027758-T1 | |
LLU|FUN_027759-T1 | UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER |
LLU|FUN_027760-T1 | UBIQUILIN |
LLU|FUN_027761-T1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
LLU|FUN_027762-T1 | |
LLU|FUN_027763-T1 | ALKALINE CERAMIDASE |
LLU|FUN_027764-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
LLU|FUN_027765-T1 | |
LLU|FUN_027766-T1 | |
LLU|FUN_027767-T1 | |
LLU|FUN_027768-T1 | |
LLU|FUN_027769-T1 | |
LLU|FUN_027770-T1 | |
LLU|FUN_027771-T1 | |
LLU|FUN_027772-T1 | |
LLU|FUN_027773-T1 | |
LLU|FUN_027774-T1 | |
LLU|FUN_027775-T1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
LLU|FUN_027776-T1 | JNK/SAPK-ASSOCIATED PROTEIN |
LLU|FUN_027777-T1 | |
LLU|FUN_027778-T1 | UBIQUITIN LIGASE PROTEIN CHFR |
LLU|FUN_027779-T1 | |
LLU|FUN_027780-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_027781-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_027782-T1 | COMPLEMENT COMPONENT 1 |
LLU|FUN_027783-T1 | |
LLU|FUN_027784-T1 | ZINC FINGER, CCHC DOMAIN CONTAINING 8 |
LLU|FUN_027785-T1 | UNCHARACTERIZED |
LLU|FUN_027786-T1 | |
LLU|FUN_027787-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_027788-T1 | ZINC FINGER PROTEIN |
LLU|FUN_027789-T1 | |
LLU|FUN_027790-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_027791-T1 | GAMETOGENETIN-BINDING PROTEIN 2 |
LLU|FUN_027792-T1 | |
LLU|FUN_027793-T1 | |
LLU|FUN_027794-T1 | |
LLU|FUN_027795-T1 | 14-3-3 PROTEIN |
LLU|FUN_027796-T1 | |
LLU|FUN_027797-T1 | RIBOSOMAL RNA METHYLTRANSFERASE |
LLU|FUN_027798-T1 | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED |
LLU|FUN_027799-T1 | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED |
LLU|FUN_027800-T1 | |
LLU|FUN_027801-T1 | |
LLU|FUN_027802-T1 | |
LLU|FUN_027803-T1 | |
LLU|FUN_027804-T1 |