Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_027449-T1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
LLU|FUN_027450-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
LLU|FUN_027451-T1 | |
LLU|FUN_027452-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
LLU|FUN_027453-T1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
LLU|FUN_027454-T1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
LLU|FUN_027455-T1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
LLU|FUN_027456-T1 | |
LLU|FUN_027457-T1 | |
LLU|FUN_027458-T1 | |
LLU|FUN_027459-T1 | |
LLU|FUN_027460-T1 | |
LLU|FUN_027461-T1 | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 |
LLU|FUN_027462-T1 | |
LLU|FUN_027463-T1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
LLU|FUN_027464-T1 | T-BOX PROTEIN-RELATED |
LLU|FUN_027465-T1 | |
LLU|FUN_027466-T1 | |
LLU|FUN_027467-T1 | |
LLU|FUN_027468-T1 | |
LLU|FUN_027469-T1 | |
LLU|FUN_027470-T1 | |
LLU|FUN_027471-T1 | RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 |
LLU|FUN_027472-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
LLU|FUN_027473-T1 | CUE DOMAIN CONTAINING 2 |
LLU|FUN_027474-T1 | ISOBUTYRYL-COA DEHYDROGENASE |
LLU|FUN_027475-T1 | |
LLU|FUN_027476-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_027477-T1 | |
LLU|FUN_027478-T1 | |
LLU|FUN_027479-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
LLU|FUN_027480-T1 | KINETOCHORE PROTEIN NDC80 |
LLU|FUN_027481-T1 | TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB |
LLU|FUN_027482-T1 | - |
LLU|FUN_027483-T1 | |
LLU|FUN_027484-T1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_027485-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
LLU|FUN_027486-T1 | |
LLU|FUN_027487-T1 | |
LLU|FUN_027488-T1 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
LLU|FUN_027489-T1 | - |
LLU|FUN_027490-T1 | ANOCTAMIN |
LLU|FUN_027491-T1 | |
LLU|FUN_027492-T1 | |
LLU|FUN_027493-T1 | |
LLU|FUN_027494-T1 | ANOCTAMIN |
LLU|FUN_027495-T1 | |
LLU|FUN_027496-T1 | T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED |
LLU|FUN_027497-T1 | |
LLU|FUN_027498-T1 | CRUMBS FAMILY MEMBER |