About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_027499-T1
LLU|FUN_027500-T1
LLU|FUN_027501-T1
LLU|FUN_027502-T1
LLU|FUN_027503-T1
LLU|FUN_027504-T1
LLU|FUN_027505-T1FRIZZLED
LLU|FUN_027506-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_027507-T1
LLU|FUN_027508-T1
LLU|FUN_027509-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_027510-T1
LLU|FUN_027511-T1UNCHARACTERIZED
LLU|FUN_027512-T1
LLU|FUN_027513-T1SET DOMAIN PROTEINS
LLU|FUN_027514-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
LLU|FUN_027515-T1
LLU|FUN_027516-T1TRANS-SULFURATION ENZYME FAMILY MEMBER
LLU|FUN_027517-T1TRANS-SULFURATION ENZYME FAMILY MEMBER
LLU|FUN_027518-T1
LLU|FUN_027519-T1
LLU|FUN_027520-T1KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
LLU|FUN_027521-T1KINESIN-RELATED PROTEIN 6
LLU|FUN_027522-T1DNA LIGASE 4
LLU|FUN_027523-T1
LLU|FUN_027524-T1TRANSPORTIN 3 AND IMPORTIN 13
LLU|FUN_027525-T1MENORIN (DENDRITIC BRANCHING PROTEIN)
LLU|FUN_027526-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72
LLU|FUN_027527-T1AGAP001331-PA-RELATED
LLU|FUN_027528-T1
LLU|FUN_027529-T1
LLU|FUN_027530-T1
LLU|FUN_027531-T1
LLU|FUN_027532-T1
LLU|FUN_027533-T1
LLU|FUN_027534-T1
LLU|FUN_027535-T1MYOTROPHIN
LLU|FUN_027536-T1PATHOGENESIS-RELATED FAMILY PROTEIN
LLU|FUN_027537-T1
LLU|FUN_027538-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
LLU|FUN_027541-T1
LLU|FUN_027542-T1
LLU|FUN_027543-T1CYTOKINE RECEPTOR
LLU|FUN_027544-T1ATP-BINDING CASSETTE SUB-FAMILY C
LLU|FUN_027545-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_027546-T1CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
LLU|FUN_027547-T1
LLU|FUN_027548-T1
LLU|FUN_027549-T1
LLU|FUN_027550-T1
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