About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_027905-T1LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
LLU|FUN_027906-T1DOCKING PROTEIN RELATED
LLU|FUN_027907-T1
LLU|FUN_027908-T1E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN
LLU|FUN_027909-T1AMINO ACID TRANSPORTER
LLU|FUN_027910-T1ZINC KNUCKLE DOMAINCONTAINING PROTEIN
LLU|FUN_027911-T1AMINO ACID TRANSPORTER
LLU|FUN_027912-T1
LLU|FUN_027913-T1ZINC FINGER PROTEIN
LLU|FUN_027914-T1DOUBLECORTIN DOMAIN CONTAINING 2
LLU|FUN_027915-T1
LLU|FUN_027916-T1
LLU|FUN_027917-T1
LLU|FUN_027918-T1DOUBLECORTIN DOMAIN CONTAINING 2
LLU|FUN_027919-T1
LLU|FUN_027920-T1OXIDOREDUCTASE-RELATED
LLU|FUN_027921-T1
LLU|FUN_027922-T1TGF-BETA FAMILY
LLU|FUN_027923-T1
LLU|FUN_027924-T1
LLU|FUN_027925-T1SODIUM/CALCIUM EXCHANGER
LLU|FUN_027926-T1DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN
LLU|FUN_027927-T1GOLGIN-84
LLU|FUN_027928-T1SOLUBLE NSF ATTACHMENT PROTEIN SNAP
LLU|FUN_027929-T1
LLU|FUN_027930-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN 1
LLU|FUN_027931-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN 1
LLU|FUN_027932-T1WD40 REPEAT DOMAIN 95
LLU|FUN_027933-T1
LLU|FUN_027934-T1
LLU|FUN_027935-T1
LLU|FUN_027936-T1
LLU|FUN_027937-T1
LLU|FUN_027938-T1
LLU|FUN_027939-T1
LLU|FUN_027940-T1
LLU|FUN_027941-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_027942-T1
LLU|FUN_027943-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_027944-T1
LLU|FUN_027945-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_027946-T1IG-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_027947-T1
LLU|FUN_027948-T1PROTEIN CBG24663
LLU|FUN_027949-T1
LLU|FUN_027950-T1
LLU|FUN_027951-T1
LLU|FUN_027952-T1
LLU|FUN_027953-T1ANGIOMOTIN
LLU|FUN_027954-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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