Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_027955-T1 | DENTIN SIALOPHOSPHOPROTEIN |
LLU|FUN_027956-T1 | |
LLU|FUN_027957-T1 | ANGIOMOTIN |
LLU|FUN_027958-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_027959-T1 | |
LLU|FUN_027960-T1 | |
LLU|FUN_027961-T1 | |
LLU|FUN_027962-T1 | |
LLU|FUN_027963-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_027964-T1 | |
LLU|FUN_027965-T1 | |
LLU|FUN_027966-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
LLU|FUN_027967-T1 | |
LLU|FUN_027968-T1 | WSCD FAMILY MEMBER CG9164 |
LLU|FUN_027969-T1 | WSCD FAMILY MEMBER CG9164 |
LLU|FUN_027970-T1 | |
LLU|FUN_027971-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_027972-T1 | |
LLU|FUN_027973-T1 | |
LLU|FUN_027974-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
LLU|FUN_027975-T1 | |
LLU|FUN_027976-T1 | KINESIN-RELATED |
LLU|FUN_027977-T1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 |
LLU|FUN_027978-T1 | |
LLU|FUN_027979-T1 | |
LLU|FUN_027982-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_027983-T1 | GALACTOSE-3-O-SULFOTRANSFERASE |
LLU|FUN_027984-T1 | |
LLU|FUN_027985-T1 | GALACTOSE-3-O-SULFOTRANSFERASE |
LLU|FUN_027986-T1 | |
LLU|FUN_027987-T1 | |
LLU|FUN_027988-T1 | |
LLU|FUN_027989-T1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
LLU|FUN_027990-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG |
LLU|FUN_027991-T1 | |
LLU|FUN_027992-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
LLU|FUN_027993-T1 | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED |
LLU|FUN_027994-T1 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING |
LLU|FUN_027995-T1 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING |
LLU|FUN_027996-T1 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING |
LLU|FUN_027997-T1 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED |
LLU|FUN_027998-T1 | TETRASPANIN |
LLU|FUN_027999-T1 | |
LLU|FUN_028000-T1 | NUCLEOPORIN NUP35 |
LLU|FUN_028001-T1 | RAN BINDING PROTEIN 9-RELATED |
LLU|FUN_028002-T1 | FI04035P |
LLU|FUN_028003-T1 | |
LLU|FUN_028004-T1 | |
LLU|FUN_028005-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 |
LLU|FUN_028006-T1 |