About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028327-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_028328-T1
LLU|FUN_028329-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_028330-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_028331-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_028332-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_028333-T1
LLU|FUN_028334-T1
LLU|FUN_028335-T1
LLU|FUN_028336-T1
LLU|FUN_028337-T1
LLU|FUN_028338-T1ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL
LLU|FUN_028339-T1TATA ELEMENT MODULATORY FACTOR TMF1
LLU|FUN_028341-T1E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER
LLU|FUN_028342-T1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
LLU|FUN_028343-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_028344-T1RAD50-INTERACTING PROTEIN 1 RINT-1
LLU|FUN_028345-T1
LLU|FUN_028346-T1
LLU|FUN_028347-T1
LLU|FUN_028348-T1
LLU|FUN_028349-T1
LLU|FUN_028350-T1
LLU|FUN_028351-T1
LLU|FUN_028352-T1
LLU|FUN_028353-T1
LLU|FUN_028354-T1
LLU|FUN_028355-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
LLU|FUN_028356-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 12
LLU|FUN_028357-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_028358-T1
LLU|FUN_028359-T1
LLU|FUN_028360-T1
LLU|FUN_028361-T1
LLU|FUN_028362-T1UNCHARACTERIZED
LLU|FUN_028363-T1
LLU|FUN_028364-T1UNCHARACTERIZED
LLU|FUN_028365-T1MYOSIN LIGHT CHAIN 1, 3
LLU|FUN_028366-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
LLU|FUN_028368-T1GLYCOPROTEIN HORMONE RECEPTOR
LLU|FUN_028369-T1OVOCHYMASE-RELATED
LLU|FUN_028370-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
LLU|FUN_028371-T1
LLU|FUN_028372-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_028373-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
LLU|FUN_028374-T1
LLU|FUN_028375-T1
LLU|FUN_028376-T1
LLU|FUN_028377-T1
LLU|FUN_028378-T1
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