Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_028379-T1 | |
LLU|FUN_028380-T1 | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER |
LLU|FUN_028381-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
LLU|FUN_028382-T1 | UNCHARACTERIZED |
LLU|FUN_028383-T1 | CASEIN KINASE II SUBUNIT ALPHA |
LLU|FUN_028384-T1 | ORF PROTEIN |
LLU|FUN_028385-T1 | |
LLU|FUN_028386-T1 | RHOPHILIN |
LLU|FUN_028387-T1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
LLU|FUN_028388-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
LLU|FUN_028389-T1 | MYOSIN LIGHT CHAIN 1, 3 |
LLU|FUN_028390-T1 | OTU DOMAIN CONTAINING PROTEIN |
LLU|FUN_028391-T1 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 |
LLU|FUN_028392-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
LLU|FUN_028393-T1 | UNCHARACTERIZED |
LLU|FUN_028394-T1 | BICOID-INTERACTING PROTEIN RELATED |
LLU|FUN_028395-T1 | |
LLU|FUN_028396-T1 | |
LLU|FUN_028397-T1 | |
LLU|FUN_028398-T1 | |
LLU|FUN_028399-T1 | RAN GUANINE NUCLEOTIDE RELEASE FACTOR |
LLU|FUN_028400-T1 | |
LLU|FUN_028401-T1 | |
LLU|FUN_028402-T1 | |
LLU|FUN_028403-T1 | |
LLU|FUN_028404-T1 | |
LLU|FUN_028405-T1 | |
LLU|FUN_028406-T1 | |
LLU|FUN_028407-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_028408-T1 | |
LLU|FUN_028409-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028410-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028411-T1 | |
LLU|FUN_028412-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028413-T1 | |
LLU|FUN_028414-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028415-T1 | |
LLU|FUN_028416-T1 | |
LLU|FUN_028417-T1 | |
LLU|FUN_028418-T1 | |
LLU|FUN_028419-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028420-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028421-T1 | |
LLU|FUN_028422-T1 | |
LLU|FUN_028423-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_028424-T1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
LLU|FUN_028425-T1 | |
LLU|FUN_028426-T1 | TRNA METHYLTRANSFERASE |
LLU|FUN_028427-T1 | |
LLU|FUN_028428-T1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |