Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_028532-T1 | 3-5 EXONUCLEASE |
LLU|FUN_028533-T1 | UNCHARACTERIZED |
LLU|FUN_028534-T1 | ERO1-RELATED |
LLU|FUN_028535-T1 | |
LLU|FUN_028536-T1 | |
LLU|FUN_028537-T1 | INTEGRAL MEMBRANE PROTEIN GPR137 |
LLU|FUN_028538-T1 | SOLEUCYL-TRNA SYNTHETASE |
LLU|FUN_028539-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_028540-T1 | EPPIN |
LLU|FUN_028541-T1 | |
LLU|FUN_028545-T1 | |
LLU|FUN_028546-T1 | |
LLU|FUN_028547-T1 | |
LLU|FUN_028548-T1 | HOMEOBOX PROTEIN MSX |
LLU|FUN_028549-T1 | |
LLU|FUN_028550-T1 | |
LLU|FUN_028551-T1 | |
LLU|FUN_028552-T1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
LLU|FUN_028553-T1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
LLU|FUN_028554-T1 | RNA BINDING PROTEIN |
LLU|FUN_028555-T1 | |
LLU|FUN_028556-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
LLU|FUN_028557-T1 | MYOTROPHIN |
LLU|FUN_028558-T1 | SENTRIN-SPECIFIC PROTEASE |
LLU|FUN_028559-T1 | THIOREDOXIN PEROXIDASE |
LLU|FUN_028560-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 |
LLU|FUN_028561-T1 | PROTEIN CIP2A |
LLU|FUN_028562-T1 | PROTEIN CIP2A |
LLU|FUN_028563-T1 | |
LLU|FUN_028564-T1 | RAS-LIKE FAMILY MEMBER 11 |
LLU|FUN_028565-T1 | |
LLU|FUN_028566-T1 | ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 3 |
LLU|FUN_028567-T1 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
LLU|FUN_028568-T1 | CGI-41 METHYLTRANSFERASE |
LLU|FUN_028569-T1 | ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_028570-T1 | |
LLU|FUN_028571-T1 | |
LLU|FUN_028572-T1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
LLU|FUN_028573-T1 | |
LLU|FUN_028574-T1 | RIKEN CDNA D130052B06 GENE |
LLU|FUN_028575-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_028576-T1 | |
LLU|FUN_028577-T1 | |
LLU|FUN_028578-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_028579-T1 | MITOCHONDRIAL ATP SYNTHASE B CHAIN |
LLU|FUN_028580-T1 | INNER CENTROMERE PROTEIN |
LLU|FUN_028581-T1 | |
LLU|FUN_028582-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
LLU|FUN_028583-T1 | COATOMER SUBUNIT BETA |
LLU|FUN_028584-T1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |