Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_028636-T1 | |
LLU|FUN_028637-T1 | |
LLU|FUN_028638-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
LLU|FUN_028639-T1 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
LLU|FUN_028640-T1 | |
LLU|FUN_028641-T1 | |
LLU|FUN_028642-T1 | POLYCOMB GROUP PROTEIN |
LLU|FUN_028643-T1 | |
LLU|FUN_028644-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN |
LLU|FUN_028645-T1 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER |
LLU|FUN_028646-T1 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED |
LLU|FUN_028647-T1 | DUAL OXIDASE 2 |
LLU|FUN_028648-T1 | |
LLU|FUN_028649-T1 | |
LLU|FUN_028650-T1 | |
LLU|FUN_028651-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_028652-T1 | ALLOGRAFT INFLAMMATORY FACTOR-1 |
LLU|FUN_028653-T1 | MYOTROPHIN |
LLU|FUN_028654-T1 | BA1-643 |
LLU|FUN_028655-T1 | CHROMOSOME 19 C19ORF81 HOMOLOG |
LLU|FUN_028656-T1 | |
LLU|FUN_028657-T1 | |
LLU|FUN_028658-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_028659-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_028660-T1 | FANCONI ANEMIA GROUP G PROTEIN FAMILY MEMBER |
LLU|FUN_028661-T1 | PROTEIN TFG |
LLU|FUN_028662-T1 | U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10 |
LLU|FUN_028663-T1 | |
LLU|FUN_028664-T1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 |
LLU|FUN_028665-T1 | |
LLU|FUN_028666-T1 | |
LLU|FUN_028667-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_028668-T1 | ANTIGEN BSP, PUTATIVE-RELATED |
LLU|FUN_028669-T1 | AGAP008170-PA |
LLU|FUN_028670-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
LLU|FUN_028671-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_028672-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_028673-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
LLU|FUN_028674-T1 | |
LLU|FUN_028675-T1 | 60S RIBOSOMAL PROTEIN L21 |
LLU|FUN_028676-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_028677-T1 | MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 |
LLU|FUN_028678-T1 | |
LLU|FUN_028679-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_028680-T1 | |
LLU|FUN_028681-T1 | |
LLU|FUN_028682-T1 | |
LLU|FUN_028683-T1 | |
LLU|FUN_028684-T1 | PROTEIN FAM199X |
LLU|FUN_028685-T1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |