About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_028937-T1PROTEIN MAX MYC-ASSOCIATED FACTOR X
LLU|FUN_028938-T1ALPHA- 1,6 -FUCOSYLTRANSFERASE
LLU|FUN_028939-T1
LLU|FUN_028940-T1
LLU|FUN_028941-T1
LLU|FUN_028942-T1ALPHA- 1,6 -FUCOSYLTRANSFERASE
LLU|FUN_028943-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_028944-T1RIBONUCLEASE P PROTEIN SUBUNIT P20
LLU|FUN_028945-T1
LLU|FUN_028946-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
LLU|FUN_028947-T1
LLU|FUN_028948-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
LLU|FUN_028949-T1
LLU|FUN_028950-T1
LLU|FUN_028951-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11
LLU|FUN_028952-T1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
LLU|FUN_028953-T1
LLU|FUN_028954-T1
LLU|FUN_028955-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_028956-T1
LLU|FUN_028957-T1
LLU|FUN_028958-T1UNCHARACTERIZED
LLU|FUN_028959-T1UNCHARACTERIZED
LLU|FUN_028960-T1CREB-REGULATED TRANSCRIPTION COACTIVATOR
LLU|FUN_028961-T1
LLU|FUN_028962-T1CREB-REGULATED TRANSCRIPTION COACTIVATOR
LLU|FUN_028963-T1
LLU|FUN_028964-T1RAS-LIKE FAMILY MEMBER 11
LLU|FUN_028965-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J
LLU|FUN_028966-T1C2 DOMAIN-CONTAINING PROTEIN
LLU|FUN_028967-T160S RIBOSOMAL PROTEIN L36
LLU|FUN_028968-T1
LLU|FUN_028969-T1ASPARTYL/LYSYL-TRNA SYNTHETASE
LLU|FUN_028970-T1INTEGRATOR COMPLEX SUBUNIT 3
LLU|FUN_028971-T1
LLU|FUN_028972-T1
LLU|FUN_028973-T1
LLU|FUN_028974-T1
LLU|FUN_028975-T1
LLU|FUN_028976-T1
LLU|FUN_028977-T1
LLU|FUN_028978-T1
LLU|FUN_028979-T1
LLU|FUN_028980-T1
LLU|FUN_028981-T1PHOSPHOHEXOMUTASE FAMILY MEMBER
LLU|FUN_028982-T1PHOSPHOHEXOMUTASE FAMILY MEMBER
LLU|FUN_028983-T1AMINO ACID TRANSPORTER
LLU|FUN_028984-T1DYNEIN INTERMEDIATE CHAIN
LLU|FUN_028986-T1ANTI-SILENCING PROTEIN 1
LLU|FUN_028987-T1
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