Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029439-T1 | |
LLU|FUN_029440-T1 | |
LLU|FUN_029441-T1 | NHL REPEAT-CONTAINING PROTEIN-RELATED |
LLU|FUN_029442-T1 | BEIGE/BEACH-RELATED |
LLU|FUN_029443-T1 | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR |
LLU|FUN_029444-T1 | |
LLU|FUN_029445-T1 | HEAT SHOCK FACTOR 2-BINDING PROTEIN |
LLU|FUN_029446-T1 | SULFITE REDUCTASE |
LLU|FUN_029447-T1 | |
LLU|FUN_029448-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
LLU|FUN_029449-T1 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
LLU|FUN_029450-T1 | UNCHARACTERIZED |
LLU|FUN_029451-T1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
LLU|FUN_029452-T1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
LLU|FUN_029453-T1 | LOC361192 |
LLU|FUN_029454-T1 | |
LLU|FUN_029455-T1 | RING FINGER AND SRY DOMAIN-CONTAINING |
LLU|FUN_029456-T1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
LLU|FUN_029457-T1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
LLU|FUN_029458-T1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
LLU|FUN_029461-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_029462-T1 | |
LLU|FUN_029463-T1 | PEPTIDASE |
LLU|FUN_029464-T1 | |
LLU|FUN_029465-T1 | F-BOX ONLY PROTEIN 4 |
LLU|FUN_029466-T1 | GATOR COMPLEX PROTEIN WDR59 |
LLU|FUN_029467-T1 | ZINC FINGER PROTEIN-RELATED |
LLU|FUN_029468-T1 | TRNA-SPECIFIC ADENOSINE DEAMINASE 1 |
LLU|FUN_029469-T1 | FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I |
LLU|FUN_029470-T1 | |
LLU|FUN_029471-T1 | |
LLU|FUN_029472-T1 | |
LLU|FUN_029473-T1 | |
LLU|FUN_029474-T1 | |
LLU|FUN_029475-T1 | ABC1 FAMILY PROTEIN |
LLU|FUN_029476-T1 | P25 ALPHA-RELATED |
LLU|FUN_029477-T1 | |
LLU|FUN_029478-T1 | |
LLU|FUN_029479-T1 | |
LLU|FUN_029480-T1 | SPHINGOMYELIN PHOSPHODIESTERASE |
LLU|FUN_029481-T1 | SPHINGOMYELIN PHOSPHODIESTERASE |
LLU|FUN_029482-T1 | PLEXUS, ISOFORM A |
LLU|FUN_029483-T1 | |
LLU|FUN_029484-T1 | |
LLU|FUN_029485-T1 | |
LLU|FUN_029486-T1 | |
LLU|FUN_029487-T1 | GENETIC SUPPRESSOR ELEMENT 1 |
LLU|FUN_029488-T1 | DNA REPLICATION COMPLEX GINS PROTEIN PSF2 |
LLU|FUN_029489-T1 | TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER |
LLU|FUN_029490-T1 |