About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_029439-T1
LLU|FUN_029440-T1
LLU|FUN_029441-T1NHL REPEAT-CONTAINING PROTEIN-RELATED
LLU|FUN_029442-T1BEIGE/BEACH-RELATED
LLU|FUN_029443-T1ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR
LLU|FUN_029444-T1
LLU|FUN_029445-T1HEAT SHOCK FACTOR 2-BINDING PROTEIN
LLU|FUN_029446-T1SULFITE REDUCTASE
LLU|FUN_029447-T1
LLU|FUN_029448-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
LLU|FUN_029449-T1TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED
LLU|FUN_029450-T1UNCHARACTERIZED
LLU|FUN_029451-T1POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
LLU|FUN_029452-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
LLU|FUN_029453-T1LOC361192
LLU|FUN_029454-T1
LLU|FUN_029455-T1RING FINGER AND SRY DOMAIN-CONTAINING
LLU|FUN_029456-T1CHROMOSOME 20 ORF85 FAMILY MEMBER
LLU|FUN_029457-T1LIM DOMAIN-CONTAINING PROTEIN JUB
LLU|FUN_029458-T1LIM DOMAIN-CONTAINING PROTEIN JUB
LLU|FUN_029461-T1GTP-BINDING PROTEIN ALPHA SUBUNIT
LLU|FUN_029462-T1
LLU|FUN_029463-T1PEPTIDASE
LLU|FUN_029464-T1
LLU|FUN_029465-T1F-BOX ONLY PROTEIN 4
LLU|FUN_029466-T1GATOR COMPLEX PROTEIN WDR59
LLU|FUN_029467-T1ZINC FINGER PROTEIN-RELATED
LLU|FUN_029468-T1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
LLU|FUN_029469-T1FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
LLU|FUN_029470-T1
LLU|FUN_029471-T1
LLU|FUN_029472-T1
LLU|FUN_029473-T1
LLU|FUN_029474-T1
LLU|FUN_029475-T1ABC1 FAMILY PROTEIN
LLU|FUN_029476-T1P25 ALPHA-RELATED
LLU|FUN_029477-T1
LLU|FUN_029478-T1
LLU|FUN_029479-T1
LLU|FUN_029480-T1SPHINGOMYELIN PHOSPHODIESTERASE
LLU|FUN_029481-T1SPHINGOMYELIN PHOSPHODIESTERASE
LLU|FUN_029482-T1PLEXUS, ISOFORM A
LLU|FUN_029483-T1
LLU|FUN_029484-T1
LLU|FUN_029485-T1
LLU|FUN_029486-T1
LLU|FUN_029487-T1GENETIC SUPPRESSOR ELEMENT 1
LLU|FUN_029488-T1DNA REPLICATION COMPLEX GINS PROTEIN PSF2
LLU|FUN_029489-T1TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER
LLU|FUN_029490-T1
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