About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_029491-T1FORKHEAD BOX PROTEIN
LLU|FUN_029492-T1
LLU|FUN_029493-T1F-BOX ONLY PROTEIN 6-LIKE PROTEIN
LLU|FUN_029494-T1AMP DEAMINASE
LLU|FUN_029495-T1
LLU|FUN_029496-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_029497-T1POLYCYSTIN-1
LLU|FUN_029498-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_029499-T1
LLU|FUN_029500-T1VESICLE PROTEIN SORTING-ASSOCIATED
LLU|FUN_029501-T1
LLU|FUN_029502-T1MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
LLU|FUN_029503-T1NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1
LLU|FUN_029504-T1
LLU|FUN_029505-T1LEUCOKININ RECEPTOR-RELATED
LLU|FUN_029506-T1
LLU|FUN_029507-T1
LLU|FUN_029508-T1
LLU|FUN_029509-T1
LLU|FUN_029510-T1
LLU|FUN_029511-T1
LLU|FUN_029512-T1POU DOMAIN
LLU|FUN_029513-T1
LLU|FUN_029514-T1
LLU|FUN_029515-T1
LLU|FUN_029516-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_029517-T1PROTEIN KINASE C, MU
LLU|FUN_029518-T1
LLU|FUN_029519-T1
LLU|FUN_029520-T1RIBOSOMAL PROTEIN S6 KINASE
LLU|FUN_029521-T1PHD FINGER TRANSCRIPTION FACTOR
LLU|FUN_029522-T1
LLU|FUN_029523-T1
LLU|FUN_029524-T1
LLU|FUN_029525-T1RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
LLU|FUN_029526-T1
LLU|FUN_029527-T1
LLU|FUN_029528-T1
LLU|FUN_029529-T1
LLU|FUN_029530-T1
LLU|FUN_029531-T1
LLU|FUN_029532-T1
LLU|FUN_029533-T1METAL DEPENDENT HYDROLASE - RELATED
LLU|FUN_029534-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
LLU|FUN_029535-T1METAL DEPENDENT HYDROLASE - RELATED
LLU|FUN_029536-T1PHOSPHATIDYLINOSITOL KINASE
LLU|FUN_029537-T1PHOSPHATIDYLINOSITOL KINASE
LLU|FUN_029538-T1
LLU|FUN_029539-T1
LLU|FUN_029540-T1
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