About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028814-T160S RIBOSOMAL PROTEIN L27
OS493_028815-T1DNA POLYMERASE IOTA
OS493_028816-T114-3-3 PROTEIN
OS493_028817-T114-3-3 PROTEIN
OS493_028818-T1DYNACTIN SUBUNIT
OS493_028819-T1BONUS, ISOFORM C-RELATED
OS493_028820-T1SERINE HYDROXYMETHYLTRANSFERASE
OS493_028821-T1DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
OS493_028822-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
OS493_028823-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
OS493_028824-T1GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
OS493_028825-T1NON-SPECIFIC LETHAL 1, ISOFORM M
OS493_028826-T1NON-SPECIFIC LETHAL 1, ISOFORM M
OS493_028827-T1
OS493_028828-T1UDP-GLUCOSE 4-EPIMERASE
OS493_028829-T1ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL
OS493_028830-T1SOLUTE CARRIER FAMILY 5
OS493_028831-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_028832-T1ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED
OS493_028833-T1
OS493_028834-T1
OS493_028835-T1
OS493_028836-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_028837-T1ZINC FINGER PROTEIN
OS493_028838-T1MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN
OS493_028839-T1MALATE DEHYDROGENASE
OS493_028840-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_028841-T1
OS493_028842-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_028843-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_028844-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_028845-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_028846-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_028847-T1BARDET-BIEDL SYNDROME 12 PROTEIN
OS493_028848-T1
OS493_028849-T1BARDET-BIEDL SYNDROME 12 PROTEIN
OS493_028850-T1
OS493_028851-T1
OS493_028852-T160 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL
OS493_028853-T110 KDA HEAT SHOCK PROTEIN
OS493_028854-T1CITRATE SYNTHASE
OS493_028855-T1AMINO ACID TRANSPORTER
OS493_028857-T1AMINO ACID TRANSPORTER
OS493_028858-T1OPSIN
OS493_028859-T1CYTOCHROME P450 20A1
OS493_028860-T1CYTOCHROME P450 20A1
OS493_028861-T1
OS493_028862-T1CYTOCHROME P450 20A1
OS493_028863-T1
OS493_028865-T1NEUROTRANSMITTER GATED ION CHANNEL
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