Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028814-T1 | 60S RIBOSOMAL PROTEIN L27 |
OS493_028815-T1 | DNA POLYMERASE IOTA |
OS493_028816-T1 | 14-3-3 PROTEIN |
OS493_028817-T1 | 14-3-3 PROTEIN |
OS493_028818-T1 | DYNACTIN SUBUNIT |
OS493_028819-T1 | BONUS, ISOFORM C-RELATED |
OS493_028820-T1 | SERINE HYDROXYMETHYLTRANSFERASE |
OS493_028821-T1 | DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN |
OS493_028822-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
OS493_028823-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
OS493_028824-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
OS493_028825-T1 | NON-SPECIFIC LETHAL 1, ISOFORM M |
OS493_028826-T1 | NON-SPECIFIC LETHAL 1, ISOFORM M |
OS493_028827-T1 | |
OS493_028828-T1 | UDP-GLUCOSE 4-EPIMERASE |
OS493_028829-T1 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
OS493_028830-T1 | SOLUTE CARRIER FAMILY 5 |
OS493_028831-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_028832-T1 | ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED |
OS493_028833-T1 | |
OS493_028834-T1 | |
OS493_028835-T1 | |
OS493_028836-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_028837-T1 | ZINC FINGER PROTEIN |
OS493_028838-T1 | MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN |
OS493_028839-T1 | MALATE DEHYDROGENASE |
OS493_028840-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_028841-T1 | |
OS493_028842-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_028843-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_028844-T1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
OS493_028845-T1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
OS493_028846-T1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
OS493_028847-T1 | BARDET-BIEDL SYNDROME 12 PROTEIN |
OS493_028848-T1 | |
OS493_028849-T1 | BARDET-BIEDL SYNDROME 12 PROTEIN |
OS493_028850-T1 | |
OS493_028851-T1 | |
OS493_028852-T1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
OS493_028853-T1 | 10 KDA HEAT SHOCK PROTEIN |
OS493_028854-T1 | CITRATE SYNTHASE |
OS493_028855-T1 | AMINO ACID TRANSPORTER |
OS493_028857-T1 | AMINO ACID TRANSPORTER |
OS493_028858-T1 | OPSIN |
OS493_028859-T1 | CYTOCHROME P450 20A1 |
OS493_028860-T1 | CYTOCHROME P450 20A1 |
OS493_028861-T1 | |
OS493_028862-T1 | CYTOCHROME P450 20A1 |
OS493_028863-T1 | |
OS493_028865-T1 | NEUROTRANSMITTER GATED ION CHANNEL |