About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028927-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_028928-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_028929-T1TATA-BOX BINDING PROTEIN
OS493_028930-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_028931-T1
OS493_028932-T1
OS493_028933-T1COLLAGEN ALPHA
OS493_028934-T1
OS493_028935-T1
OS493_028936-T1TETRATRICOPEPTIDE REPEAT PROTEIN 38
OS493_028937-T1
OS493_028939-T1
OS493_028940-T1
OS493_028941-T1
OS493_028942-T1
OS493_028943-T1
OS493_028944-T1
OS493_028945-T1
OS493_028946-T1
OS493_028947-T1TRANSMEMBRANE PROTEIN 2-RELATED
OS493_028948-T1CHYMOTRYPSIN-RELATED
OS493_028949-T1CHYMOTRYPSIN-RELATED
OS493_028950-T1TRYPSIN-RELATED
OS493_028951-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_028952-T1CHYMOTRYPSIN-RELATED
OS493_028953-T1CHYMOTRYPSIN-RELATED
OS493_028954-T1
OS493_028955-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_028956-T1CHYMOTRYPSIN-RELATED
OS493_028957-T1CHYMOTRYPSIN-RELATED
OS493_028958-T1
OS493_028959-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_028960-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_028962-T1
OS493_028963-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_028964-T1
OS493_028965-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_028966-T1CD59 GLYCOPROTEIN
OS493_028967-T1INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN
OS493_028968-T1CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG
OS493_028969-T1RAD50
OS493_028970-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_028971-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_028972-T1RAD50
OS493_028974-T1RAD50
OS493_028976-T1ANKYRIN REPEAT-CONTAINING
OS493_028977-T1SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52
OS493_028978-T1RAD50
OS493_028980-T1
OS493_028981-T1ANKYRIN REPEAT FAMILY A
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