Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028710-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028711-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028712-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_028713-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028714-T1 | |
OS493_028715-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028716-T1 | |
OS493_028717-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028718-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028719-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028720-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028721-T1 | CENTROSOMAL PROTEIN 2 |
OS493_028722-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_028723-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
OS493_028724-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_028725-T1 | |
OS493_028726-T1 | |
OS493_028727-T1 | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A |
OS493_028728-T1 | |
OS493_028729-T1 | CHONDROITIN SYNTHASE |
OS493_028730-T1 | CHONDROITIN SYNTHASE |
OS493_028731-T1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
OS493_028732-T1 | |
OS493_028733-T1 | P53 INDUCED PROTEIN |
OS493_028734-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_028735-T1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
OS493_028736-T1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
OS493_028737-T1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
OS493_028738-T1 | |
OS493_028739-T1 | UNCHARACTERIZED |
OS493_028740-T1 | CBL |
OS493_028742-T1 | CBL |
OS493_028743-T1 | NUCLEOSIDE DIPHOSPHATE KINASE 7 |
OS493_028744-T1 | |
OS493_028745-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
OS493_028746-T1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2 |
OS493_028747-T1 | |
OS493_028748-T1 | |
OS493_028749-T1 | RETINOBLASTOMA-BINDING PROTEIN 5 |
OS493_028750-T1 | |
OS493_028751-T1 | |
OS493_028752-T1 | |
OS493_028753-T1 | |
OS493_028754-T1 | |
OS493_028755-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_028756-T1 | INTERFERON-INDUCED PROTEIN 44 |
OS493_028757-T1 | CONNEXIN |
OS493_028758-T1 | |
OS493_028759-T1 | INTERFERON-INDUCED PROTEIN 44 |
OS493_028760-T1 |