About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028597-T1DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
OS493_028598-T1DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
OS493_028599-T1
OS493_028600-T1DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
OS493_028601-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_028603-T1
OS493_028604-T1PROTEIN ABHD14B-LIKE
OS493_028605-T1PROTEIN ABHD14B-LIKE
OS493_028606-T1RAN BINDING PROTEIN
OS493_028607-T1PHD FINGER PROTEIN
OS493_028608-T1TESTIS-EXPRESSED PROTEIN 52
OS493_028611-T1
OS493_028612-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_028613-T1MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS
OS493_028614-T1
OS493_028615-T1
OS493_028616-T1MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS
OS493_028617-T1MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS
OS493_028618-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_028619-T1
OS493_028620-T1
OS493_028621-T1
OS493_028622-T1
OS493_028623-T1IMPORTIN-7, 8, 11
OS493_028624-T1
OS493_028625-T1
OS493_028626-T1
OS493_028627-T1
OS493_028628-T1
OS493_028629-T1
OS493_028630-T1
OS493_028631-T1
OS493_028632-T1
OS493_028633-T1
OS493_028634-T1
OS493_028635-T1PHYTOENE DESATURASE
OS493_028636-T1CYTOCHROME P450
OS493_028637-T1PHYTOENE DESATURASE
OS493_028638-T1CYTOCHROME P450 FAMILY 3
OS493_028641-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_028642-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_028643-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_028644-T1CALPAIN
OS493_028645-T1EXTENDED SYNAPTOTAGMIN-RELATED
OS493_028646-T1
OS493_028647-T1
OS493_028648-T1EXPRESSED PROTEIN
OS493_028650-T1
OS493_028652-T1
OS493_028653-T1
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