Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028323-T1 | ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN |
OS493_028324-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_028325-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_028326-T1 | |
OS493_028327-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
OS493_028328-T1 | |
OS493_028329-T1 | |
OS493_028330-T1 | |
OS493_028331-T1 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
OS493_028332-T1 | MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 |
OS493_028333-T1 | |
OS493_028334-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_028335-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_028336-T1 | GREB1-RELATED |
OS493_028337-T1 | GREB1-RELATED |
OS493_028338-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_028339-T1 | PENICILLIN-BINDING PROTEIN |
OS493_028340-T1 | PENICILLIN-BINDING PROTEIN |
OS493_028341-T1 | PENICILLIN-BINDING PROTEIN |
OS493_028342-T1 | AATF PROTEIN APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR |
OS493_028343-T1 | |
OS493_028344-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
OS493_028345-T1 | |
OS493_028346-T1 | |
OS493_028347-T1 | TYROSINASE FAMILY MEMBER |
OS493_028348-T1 | |
OS493_028349-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_028350-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_028351-T1 | TYROSINASE FAMILY MEMBER |
OS493_028352-T1 | |
OS493_028354-T1 | |
OS493_028355-T1 | INHIBITOR OF GROWTH PROTEIN |
OS493_028356-T1 | |
OS493_028357-T1 | |
OS493_028358-T1 | |
OS493_028359-T1 | |
OS493_028360-T1 | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN |
OS493_028361-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_028362-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_028364-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_028366-T1 | E3 UFM1-PROTEIN LIGASE 1 |
OS493_028367-T1 | E3 UFM1-PROTEIN LIGASE 1 |
OS493_028368-T1 | BUD13 HOMOLOG |
OS493_028369-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_028370-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_028371-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_028372-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_028373-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_028374-T1 | |
OS493_028375-T1 |