About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027984-T1
OS493_027985-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027986-T1
OS493_027987-T1
OS493_027988-T1
OS493_027989-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027990-T1
OS493_027991-T1DED DOMAIN-CONTAINING PROTEIN
OS493_027992-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027993-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_027995-T1
OS493_027996-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_027997-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_027998-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_027999-T1REGULATOR-RELATED
OS493_028000-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_028001-T1
OS493_028002-T1
OS493_028003-T1
OS493_028004-T1
OS493_028005-T1
OS493_028006-T1
OS493_028007-T1
OS493_028008-T1
OS493_028009-T1
OS493_028011-T1
OS493_028012-T1
OS493_028013-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_028015-T1
OS493_028016-T1BAX INHIBITOR-RELATED
OS493_028017-T1SECRETED PROTEIN-RELATED
OS493_028018-T1CBF1 INTERACTING COREPRESSOR CIR
OS493_028019-T1TUBULIN
OS493_028020-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_028021-T1
OS493_028022-T1
OS493_028023-T1
OS493_028025-T1
OS493_028026-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_028027-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_028029-T1
OS493_028030-T1
OS493_028031-T1
OS493_028032-T1LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN
OS493_028033-T1
OS493_028034-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE
OS493_028036-T150S/60S RIBOSOMAL PROTEIN L14/L23
OS493_028037-T1SH3 DOMAIN-BINDING PROTEIN 5
OS493_028038-T1GH11358P
OS493_028039-T1SPARC OSTEONECTIN
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