About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027830-T1
OS493_027831-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_027832-T1MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1
OS493_027833-T1METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
OS493_027834-T1METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
OS493_027835-T1MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1
OS493_027836-T1
OS493_027837-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_027838-T1
OS493_027839-T1POTASSIUM CHANNEL AKT1
OS493_027840-T1AMMONIUM TRANSPORTER MEP2
OS493_027841-T1AMMONIUM TRANSPORTER MEP2
OS493_027842-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_027843-T1
OS493_027844-T1RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG
OS493_027845-T1INTERFERON REGULATORY FACTOR
OS493_027846-T1DUF614 FAMILY PROTEIN-RELATED
OS493_027847-T1DUF614 FAMILY PROTEIN-RELATED
OS493_027848-T1ARMADILLO REPEAT-CONTAINING PROTEIN 7
OS493_027849-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
OS493_027850-T1PROTEIN HEATR9
OS493_027851-T1ACTIN
OS493_027852-T1ACTIN
OS493_027853-T1ACTIN
OS493_027854-T1ACTIN
OS493_027855-T1ACTIN
OS493_027856-T1APOLIPOPROTEIN L
OS493_027857-T1APOLIPOPROTEIN L
OS493_027858-T1APOLIPOPROTEIN L
OS493_027859-T1ACTIN
OS493_027860-T1ACTIN
OS493_027861-T1
OS493_027862-T1RIBONUCLEASE H2 SUBUNIT A
OS493_027863-T1AMINO ACID TRANSPORTER
OS493_027864-T1AMINO ACID TRANSPORTER
OS493_027865-T1
OS493_027866-T1SCP160
OS493_027867-T1AMINO ACID TRANSPORTER
OS493_027868-T1
OS493_027869-T1
OS493_027870-T1NG37
OS493_027871-T1NG37
OS493_027872-T1TRANSMEMBRANE PROTEIN 121B
OS493_027873-T1
OS493_027874-T1
OS493_027875-T1VPRBP PROTEIN-RELATED
OS493_027876-T1
OS493_027877-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_027878-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_027879-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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