About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027621-T1
OS493_027622-T1UNCHARACTERIZED
OS493_027623-T1BASIGIN RELATED
OS493_027624-T1
OS493_027625-T1
OS493_027626-T1PROTEIN SIDEKICK
OS493_027627-T1
OS493_027628-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_027629-T1
OS493_027630-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_027631-T1NITRILASE C965.09-RELATED
OS493_027632-T1-
OS493_027633-T1G-PROTEIN COUPLED RECEPTOR
OS493_027634-T1G-PROTEIN COUPLED RECEPTOR
OS493_027635-T1G-PROTEIN COUPLED RECEPTOR
OS493_027636-T1NOTUM-RELATED
OS493_027637-T1LIM/HOMEOBOX PROTEIN LHX
OS493_027638-T1WD40 REPEAT PROTEIN
OS493_027639-T1
OS493_027640-T1
OS493_027641-T1
OS493_027642-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_027644-T1LD11652P
OS493_027646-T1TGF-BETA FAMILY
OS493_027648-T1
OS493_027649-T1
OS493_027650-T1NUCLEAR PORE COMPLEX PROTEIN NUP
OS493_027651-T1
OS493_027652-T1WU:FJ29H11
OS493_027653-T1
OS493_027654-T1WU:FJ29H11
OS493_027655-T1TGF-BETA FAMILY
OS493_027656-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_027657-T1PROPERDIN
OS493_027658-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_027659-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_027660-T1
OS493_027661-T1
OS493_027662-T1SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE
OS493_027663-T1VESICLE-ASSOCIATED MEMBRANE PROTEIN 4
OS493_027665-T1ALLOGRAFT INFLAMMATORY FACTOR-1
OS493_027666-T1
OS493_027667-T1
OS493_027668-T1
OS493_027669-T1
OS493_027671-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_027672-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027673-T1
OS493_027674-T1LD22376P
OS493_027675-T1LD22376P
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