About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027405-T1
OS493_027406-T1CHARGED MULTIVESICULAR BODY PROTEIN
OS493_027407-T16-PHOSPHOGLUCONOLACTONASE
OS493_027408-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
OS493_027409-T1UNCHARACTERIZED
OS493_027410-T1DOUBLE-STRANDED RNA-BINDING PROTEIN 6
OS493_027411-T1DOUBLE-STRANDED RNA-BINDING PROTEIN 6
OS493_027412-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
OS493_027414-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_027415-T1RNA HELICASE
OS493_027416-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027417-T1
OS493_027418-T1
OS493_027419-T1
OS493_027420-T1
OS493_027421-T1
OS493_027422-T1
OS493_027423-T1MONOCARBOXYLATE TRANSPORTER
OS493_027424-T1DIAMINOPIMELATE DECARBOXYLASE
OS493_027425-T1
OS493_027426-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_027427-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_027428-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_027429-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_027430-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_027431-T1
OS493_027432-T1PX SERINE/THREONINE KINASE PXK
OS493_027433-T1PX SERINE/THREONINE KINASE PXK
OS493_027434-T1
OS493_027435-T1SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE
OS493_027436-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
OS493_027437-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_027438-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
OS493_027439-T1
OS493_027440-T1
OS493_027442-T1ALANINE AMINOTRANSFERASE
OS493_027443-T1ALANINE AMINOTRANSFERASE
OS493_027444-T1ALANINE AMINOTRANSFERASE
OS493_027445-T1UNCHARACTERIZED
OS493_027446-T1MAINTENANCE OF TELOMOERE CAPPING
OS493_027447-T1UNCHARACTERIZED
OS493_027448-T1ALANINE AMINOTRANSFERASE
OS493_027449-T1UPF0547 PROTEIN C16ORF87
OS493_027450-T1
OS493_027451-T1
OS493_027452-T1
OS493_027453-T1UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG
OS493_027454-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
OS493_027455-T1MULTICOPPER OXIDASE-RELATED
OS493_027456-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
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