About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027132-T1-
OS493_027133-T1-
OS493_027134-T1-
OS493_027135-T1
OS493_027136-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_027137-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_027138-T1PERFORIN-LIKE PROTEIN 1
OS493_027140-T1PERFORIN-LIKE PROTEIN 1
OS493_027141-T1
OS493_027142-T1
OS493_027143-T1
OS493_027146-T1
OS493_027148-T1
OS493_027149-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
OS493_027150-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_027151-T137S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL
OS493_027152-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
OS493_027153-T1AD-003 - RELATED
OS493_027154-T1
OS493_027155-T1GLYCOLIPID TRANSFER PROTEIN-RELATED
OS493_027156-T1OPSIN
OS493_027157-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_027158-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_027159-T1
OS493_027160-T1
OS493_027161-T1
OS493_027162-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_027163-T1ANKYRIN REPEAT PROTEIN
OS493_027164-T1
OS493_027165-T1VILLIN
OS493_027166-T1
OS493_027168-T1MULTICOPPER OXIDASE-RELATED
OS493_027169-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_027171-T1MALE STERILE (3) 76CA
OS493_027172-T1
OS493_027173-T1
OS493_027174-T1
OS493_027175-T1
OS493_027176-T1MULTICOPPER OXIDASE-RELATED
OS493_027177-T1
OS493_027179-T1UNCHARACTERIZED
OS493_027180-T1ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
OS493_027181-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_027182-T1
OS493_027183-T1
OS493_027184-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_027185-T1
OS493_027186-T1
OS493_027187-T1ACYL-COENZYME A THIOESTERASE-RELATED
OS493_027188-T1
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