About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027244-T1PENTRAXIN
OS493_027247-T1
OS493_027248-T1EXPRESSED PROTEIN
OS493_027249-T1
OS493_027250-T1
OS493_027251-T1
OS493_027252-T1
OS493_027253-T1SENTRIN/SUMO-SPECIFIC PROTEASE
OS493_027254-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_027255-T1
OS493_027256-T1
OS493_027257-T1
OS493_027258-T1
OS493_027259-T1PROTEIN CBG23806
OS493_027260-T1
OS493_027261-T1
OS493_027262-T1
OS493_027263-T1
OS493_027264-T1DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
OS493_027265-T1
OS493_027266-T1
OS493_027267-T1
OS493_027268-T1
OS493_027269-T1
OS493_027270-T1
OS493_027271-T1
OS493_027272-T1
OS493_027273-T1
OS493_027274-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_027275-T1PENTRAXIN
OS493_027276-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027277-T1
OS493_027278-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027279-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_027280-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_027281-T1WD40 REPEAT PROTEIN
OS493_027282-T1
OS493_027283-T1
OS493_027284-T1RIBOSOMAL RNA METHYLTRANSFERASE
OS493_027285-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_027286-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_027287-T1
OS493_027289-T1
OS493_027290-T1
OS493_027291-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN C
OS493_027292-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN C
OS493_027293-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN C
OS493_027294-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN C
OS493_027295-T1
OS493_027296-T1MOLTING PROTEIN MLT-4
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