Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026969-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_026970-T1 | |
OS493_026971-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_026972-T1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
OS493_026973-T1 | NADH-UBIQUINONE OXIDOREDUCTASE |
OS493_026974-T1 | UNCHARACTERIZED |
OS493_026975-T1 | |
OS493_026976-T1 | |
OS493_026977-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_026978-T1 | CYTOKINE RECEPTOR |
OS493_026979-T1 | |
OS493_026980-T1 | PROTEIN SIDEKICK |
OS493_026981-T1 | PROTEIN SIDEKICK |
OS493_026982-T1 | POLYCYSTIN-1 |
OS493_026983-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_026984-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_026985-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_026986-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_026987-T1 | WHEY ACDIC PROTEIN WAP |
OS493_026988-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_026989-T1 | |
OS493_026990-T1 | |
OS493_026992-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_026993-T1 | |
OS493_026994-T1 | |
OS493_026995-T1 | |
OS493_026996-T1 | |
OS493_026998-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_026999-T1 | |
OS493_027001-T1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
OS493_027002-T1 | PARTNER OF SLD5 |
OS493_027003-T1 | PARTNER OF SLD5 |
OS493_027004-T1 | |
OS493_027005-T1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
OS493_027006-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 32 |
OS493_027008-T1 | |
OS493_027009-T1 | |
OS493_027010-T1 | |
OS493_027011-T1 | |
OS493_027012-T1 | 39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL |
OS493_027013-T1 | ABSCISSION/NOCUT CHECKPOINT REGULATOR |
OS493_027014-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL |
OS493_027015-T1 | |
OS493_027016-T1 | KELCH PROTEIN |
OS493_027017-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_027018-T1 | |
OS493_027019-T1 | |
OS493_027020-T1 | |
OS493_027021-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_027022-T1 |