Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026658-T1 | SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN |
OS493_026659-T1 | |
OS493_026660-T1 | |
OS493_026661-T1 | |
OS493_026662-T1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM22 |
OS493_026663-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_026664-T1 | PROTEIN CBR-CLEC-78 |
OS493_026665-T1 | HYR DOMAIN-CONTAINING PROTEIN |
OS493_026666-T1 | |
OS493_026667-T1 | UNC-13-4A, ISOFORM B |
OS493_026668-T1 | |
OS493_026669-T1 | TMEM26 PROTEIN |
OS493_026670-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_026671-T1 | |
OS493_026672-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_026673-T1 | PROTEIN SIDEKICK |
OS493_026674-T1 | |
OS493_026675-T1 | |
OS493_026676-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_026677-T1 | FORMIN-LIKE PROTEIN |
OS493_026678-T1 | ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL |
OS493_026679-T1 | |
OS493_026680-T1 | |
OS493_026681-T1 | |
OS493_026682-T1 | TATA ELEMENT MODULATORY FACTOR TMF1 |
OS493_026683-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S24 |
OS493_026684-T1 | |
OS493_026685-T1 | NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT |
OS493_026686-T1 | 60S RIBOSOMAL PROTEIN L3-RELATED |
OS493_026687-T1 | |
OS493_026688-T1 | |
OS493_026689-T1 | |
OS493_026690-T1 | |
OS493_026692-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_026694-T1 | WD-40 REPEAT PROTEIN |
OS493_026695-T1 | WD-40 REPEAT PROTEIN |
OS493_026696-T1 | |
OS493_026697-T1 | TESTIS-EXPRESSED PROTEIN 47 |
OS493_026698-T1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
OS493_026699-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026701-T1 | |
OS493_026702-T1 | |
OS493_026703-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026704-T1 | |
OS493_026705-T1 | RETINOBLASTOMA-BINDING PROTEIN 6 |
OS493_026706-T1 | UNCHARACTERIZED |
OS493_026707-T1 | PELOTA |
OS493_026708-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
OS493_026709-T1 | |
OS493_026710-T1 |