About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010685-T1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
OS493_010686-T1UNCHARACTERIZED
OS493_010687-T1SI:ZFOS-911D5.4
OS493_010688-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_010689-T1OS02G0202900 PROTEIN
OS493_010690-T1DNA POLYMERASE DELTA SUBUNIT 2
OS493_010692-T1DNA POLYMERASE DELTA SUBUNIT 2
OS493_010693-T1-
OS493_010694-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_010695-T1BETA LACTAMASE DOMAIN
OS493_010696-T1-
OS493_010697-T1BETA LACTAMASE DOMAIN
OS493_010698-T1TRANSCRIPTION INITIATION FACTOR IA RRN3
OS493_010699-T1REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
OS493_010700-T1FORKHEAD BOX PROTEIN J1
OS493_010701-T1WD40 REPEAT PF20
OS493_010702-T1CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
OS493_010703-T1CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
OS493_010704-T1CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
OS493_010705-T1THIOPURINE S-METHYLTRANSFERASE
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