About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026326-T1SLR0625 PROTEIN
OS493_026327-T1PHD FINGER PROTEINS
OS493_026328-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_026329-T1TRANSMEMBRANE PROTEIN HTP-1 RELATED
OS493_026330-T160S RIBOSOMAL PROTEIN L31
OS493_026331-T1
OS493_026332-T1NFAT
OS493_026333-T1MATRIX PROTEIN, PUTATIVE-RELATED
OS493_026334-T1MATRIX PROTEIN, PUTATIVE-RELATED
OS493_026335-T1
OS493_026336-T1UNCHARACTERIZED
OS493_026337-T1SI:CH211-196P9.1-RELATED
OS493_026338-T1
OS493_026340-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026341-T1
OS493_026342-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026343-T1
OS493_026344-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026345-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026346-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026347-T1
OS493_026348-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_026349-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026350-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026351-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_026352-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_026353-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_026354-T1PHOSPHATIDYLINOSITOL GLYCAN, CLASS C
OS493_026355-T1DEATH DOMAIN-CONTAINING PROTEIN CRADD
OS493_026356-T1
OS493_026357-T1FAMILY WITH SEQUENCE SIMILARITY 102
OS493_026358-T1AMIDOHYDROLASE
OS493_026359-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026360-T1
OS493_026361-T1
OS493_026362-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026363-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026364-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026365-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_026366-T1
OS493_026367-T1
OS493_026368-T1MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
OS493_026369-T1
OS493_026370-T1
OS493_026371-T1
OS493_026372-T1
OS493_026373-T1
OS493_026374-T1THIOREDOXIN-LIKE PROTEN 4A, 4B
OS493_026375-T1
OS493_026376-T1
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