Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026060-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_026061-T1 | |
OS493_026062-T1 | |
OS493_026063-T1 | |
OS493_026064-T1 | |
OS493_026066-T1 | |
OS493_026067-T1 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
OS493_026068-T1 | |
OS493_026069-T1 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
OS493_026070-T1 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
OS493_026071-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
OS493_026072-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_026073-T1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
OS493_026074-T1 | INTELECTIN |
OS493_026075-T1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
OS493_026076-T1 | SERINE/THREONINE-PROTEIN KINASE TAO |
OS493_026077-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026078-T1 | |
OS493_026079-T1 | |
OS493_026080-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_026081-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_026082-T1 | HOMEOBOX PROTEIN SIX |
OS493_026083-T1 | HOMEOBOX PROTEIN SIX |
OS493_026086-T1 | HOMEOBOX PROTEIN SIX |
OS493_026088-T1 | HOMEOBOX PROTEIN SIX |
OS493_026089-T1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
OS493_026090-T1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
OS493_026091-T1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
OS493_026092-T1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
OS493_026093-T1 | |
OS493_026094-T1 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
OS493_026095-T1 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
OS493_026096-T1 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
OS493_026097-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026098-T1 | |
OS493_026099-T1 | |
OS493_026100-T1 | |
OS493_026101-T1 | |
OS493_026102-T1 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
OS493_026103-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026104-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026105-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026106-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026107-T1 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
OS493_026108-T1 | DUAL SPECIFICITY PROTEIN KINASE |
OS493_026109-T1 | |
OS493_026110-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026111-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026112-T1 | PROTEIN CBG23806 |
OS493_026113-T1 |