Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026114-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_026115-T1 | |
OS493_026116-T1 | |
OS493_026117-T1 | THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED |
OS493_026118-T1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
OS493_026119-T1 | DYNEIN HEAVY CHAIN |
OS493_026120-T1 | DYNEIN HEAVY CHAIN |
OS493_026121-T1 | THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED |
OS493_026122-T1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
OS493_026123-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35 |
OS493_026125-T1 | TRYPSIN-RELATED |
OS493_026126-T1 | ACROSIN-RELATED |
OS493_026127-T1 | CENTROSOMAL PROTEIN 2 |
OS493_026128-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_026129-T1 | |
OS493_026130-T1 | |
OS493_026131-T1 | |
OS493_026132-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_026133-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_026138-T1 | |
OS493_026139-T1 | |
OS493_026142-T1 | |
OS493_026143-T1 | |
OS493_026144-T1 | |
OS493_026145-T1 | |
OS493_026146-T1 | |
OS493_026147-T1 | ADP-RIBOSYL CYCLASE |
OS493_026148-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026149-T1 | |
OS493_026150-T1 | |
OS493_026151-T1 | |
OS493_026152-T1 | |
OS493_026153-T1 | |
OS493_026154-T1 | |
OS493_026155-T1 | |
OS493_026156-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026157-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026158-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026159-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026160-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026161-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026162-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_026163-T1 | |
OS493_026164-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_026165-T1 | |
OS493_026166-T1 | |
OS493_026167-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_026168-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_026169-T1 | |
OS493_026170-T1 |