About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026273-T1
OS493_026274-T1
OS493_026275-T1
OS493_026276-T1
OS493_026277-T1TNFR-CYS DOMAIN-CONTAINING PROTEIN
OS493_026278-T1
OS493_026279-T1
OS493_026280-T1
OS493_026281-T1
OS493_026282-T1
OS493_026283-T1
OS493_026284-T1
OS493_026285-T1
OS493_026286-T1
OS493_026287-T1
OS493_026288-T1
OS493_026289-T1
OS493_026290-T1
OS493_026291-T1
OS493_026292-T1
OS493_026293-T1THO2 PROTEIN
OS493_026294-T1
OS493_026295-T1THO2 PROTEIN
OS493_026297-T1THO2 PROTEIN
OS493_026298-T1
OS493_026299-T1
OS493_026300-T1
OS493_026301-T1PIKACHURIN-LIKE PROTEIN
OS493_026302-T1CADHERIN-23
OS493_026303-T1DESMOGLEIN FAMILY MEMBER
OS493_026304-T1
OS493_026305-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_026306-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_026308-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_026309-T1
OS493_026310-T1
OS493_026311-T1
OS493_026312-T1URICASE AND TRANSTHYRETIN-RELATED
OS493_026314-T1MITOCHONDRIAL CARRIER PROTEIN RIM2
OS493_026315-T1MITOCHONDRIAL CARRIER PROTEIN RIM2
OS493_026316-T1RAB GDP-DISSOCIATION INHIBITOR
OS493_026317-T1RAB GDP-DISSOCIATION INHIBITOR
OS493_026318-T1HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED
OS493_026319-T1STEROID RECEPTOR RNA ACTIVATOR 1
OS493_026320-T1
OS493_026321-T1STROMAL INTERACTION MOLECULE HOMOLOG
OS493_026322-T1
OS493_026323-T1AMINE OXIDASE
OS493_026324-T1
OS493_026325-T1ACID AMIDASE
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