About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026003-T1TRANSMEMBRANE PROTEIN KIAA1109
OS493_026004-T1TRANSMEMBRANE PROTEIN KIAA1109
OS493_026005-T1TRANSMEMBRANE PROTEIN KIAA1109
OS493_026006-T1
OS493_026007-T1O-METHYLTRANSFERASE
OS493_026008-T1PROGESTERONE-INDUCED BLOCKING FACTOR 1
OS493_026009-T1UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT
OS493_026010-T1MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
OS493_026011-T1B-LYMPHOCYTE ANTIGEN-RELATED
OS493_026012-T1
OS493_026013-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_026014-T1
OS493_026015-T1
OS493_026016-T1
OS493_026017-T1
OS493_026020-T1
OS493_026021-T1
OS493_026022-T1
OS493_026023-T1-
OS493_026024-T1-
OS493_026025-T1
OS493_026026-T1-
OS493_026027-T1HISTONE-LYSINE N-METHYLTRANSFERASE-RELATED
OS493_026028-T1-
OS493_026029-T1
OS493_026030-T1
OS493_026031-T1
OS493_026032-T1
OS493_026033-T1-
OS493_026034-T1
OS493_026037-T1
OS493_026038-T1
OS493_026039-T1
OS493_026040-T1
OS493_026041-T1
OS493_026042-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_026043-T1
OS493_026044-T1
OS493_026045-T1SH3 DOMAIN-CONTAINING
OS493_026046-T1
OS493_026047-T1OPSIN
OS493_026049-T1
OS493_026050-T1
OS493_026051-T1
OS493_026054-T1
OS493_026055-T1PKA ANCHORING PROTEIN
OS493_026056-T1
OS493_026057-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_026058-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_026059-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
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