About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_025788-T1BATTENIN
OS493_025789-T1
OS493_025790-T1
OS493_025791-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_025792-T1PENTRAXIN
OS493_025793-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_025794-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_025795-T1
OS493_025796-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_025797-T1
OS493_025798-T1UNCHARACTERIZED
OS493_025799-T1UNCHARACTERIZED
OS493_025800-T1COPPER AMINE OXIDASE
OS493_025801-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_025802-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_025803-T1
OS493_025804-T1PROTEIN SIDEKICK
OS493_025805-T1
OS493_025806-T1PROTEIN SIDEKICK
OS493_025807-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_025809-T1
OS493_025810-T1
OS493_025811-T1
OS493_025812-T1DED DOMAIN-CONTAINING PROTEIN
OS493_025813-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_025814-T1
OS493_025815-T1
OS493_025816-T1CENTROSOMAL PROTEIN OF 170 KDA
OS493_025817-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA
OS493_025818-T1JITTERBUG, ISOFORM N
OS493_025819-T1JITTERBUG, ISOFORM N
OS493_025820-T1CALCIUM-DEPENDENT SECRETION ACTIVATOR
OS493_025821-T1CALCIUM-DEPENDENT SECRETION ACTIVATOR
OS493_025822-T1TRANSKETOLASE
OS493_025823-T1TRANSKETOLASE
OS493_025824-T1TRANSKETOLASE
OS493_025825-T1UNCHARACTERIZED
OS493_025826-T1UNCHARACTERIZED
OS493_025827-T1POU DOMAIN
OS493_025828-T1
OS493_025829-T1CCHC-TYPE DOMAIN-CONTAINING PROTEIN
OS493_025830-T1ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
OS493_025831-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_025832-T1
OS493_025833-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_025834-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_025835-T1
OS493_025836-T1REGULATOR-RELATED
OS493_025837-T1
OS493_025838-T1RIBOSOME BIOGENESIS PROTEIN
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