Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025788-T1 | BATTENIN |
OS493_025789-T1 | |
OS493_025790-T1 | |
OS493_025791-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_025792-T1 | PENTRAXIN |
OS493_025793-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_025794-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_025795-T1 | |
OS493_025796-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_025797-T1 | |
OS493_025798-T1 | UNCHARACTERIZED |
OS493_025799-T1 | UNCHARACTERIZED |
OS493_025800-T1 | COPPER AMINE OXIDASE |
OS493_025801-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_025802-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_025803-T1 | |
OS493_025804-T1 | PROTEIN SIDEKICK |
OS493_025805-T1 | |
OS493_025806-T1 | PROTEIN SIDEKICK |
OS493_025807-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_025809-T1 | |
OS493_025810-T1 | |
OS493_025811-T1 | |
OS493_025812-T1 | DED DOMAIN-CONTAINING PROTEIN |
OS493_025813-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_025814-T1 | |
OS493_025815-T1 | |
OS493_025816-T1 | CENTROSOMAL PROTEIN OF 170 KDA |
OS493_025817-T1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
OS493_025818-T1 | JITTERBUG, ISOFORM N |
OS493_025819-T1 | JITTERBUG, ISOFORM N |
OS493_025820-T1 | CALCIUM-DEPENDENT SECRETION ACTIVATOR |
OS493_025821-T1 | CALCIUM-DEPENDENT SECRETION ACTIVATOR |
OS493_025822-T1 | TRANSKETOLASE |
OS493_025823-T1 | TRANSKETOLASE |
OS493_025824-T1 | TRANSKETOLASE |
OS493_025825-T1 | UNCHARACTERIZED |
OS493_025826-T1 | UNCHARACTERIZED |
OS493_025827-T1 | POU DOMAIN |
OS493_025828-T1 | |
OS493_025829-T1 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_025830-T1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
OS493_025831-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_025832-T1 | |
OS493_025833-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_025834-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_025835-T1 | |
OS493_025836-T1 | REGULATOR-RELATED |
OS493_025837-T1 | |
OS493_025838-T1 | RIBOSOME BIOGENESIS PROTEIN |