Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025511-T1 | - |
OS493_025512-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_025513-T1 | ADP-RIBOSYL CYCLASE |
OS493_025514-T1 | ADP-RIBOSYL CYCLASE |
OS493_025515-T1 | FERM DOMAIN CONTAINING PROTEIN |
OS493_025516-T1 | |
OS493_025517-T1 | FERM DOMAIN CONTAINING PROTEIN |
OS493_025518-T1 | |
OS493_025519-T1 | FERM DOMAIN CONTAINING PROTEIN |
OS493_025520-T1 | FERM DOMAIN CONTAINING PROTEIN |
OS493_025521-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_025522-T1 | |
OS493_025523-T1 | |
OS493_025524-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_025527-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_025528-T1 | |
OS493_025531-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_025532-T1 | ADP-RIBOSYL CYCLASE |
OS493_025533-T1 | ADP-RIBOSYL CYCLASE |
OS493_025534-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 1 |
OS493_025535-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_025536-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_025537-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_025538-T1 | |
OS493_025539-T1 | |
OS493_025540-T1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
OS493_025541-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 1 |
OS493_025542-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 1 |
OS493_025543-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_025544-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_025546-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_025547-T1 | |
OS493_025548-T1 | |
OS493_025549-T1 | REQUIRED FOR RESPIRATORY GROWTH PROTEIN 7, MITOCHONDRIAL |
OS493_025550-T1 | REQUIRED FOR RESPIRATORY GROWTH PROTEIN 7, MITOCHONDRIAL |
OS493_025551-T1 | |
OS493_025552-T1 | |
OS493_025553-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
OS493_025554-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_025555-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_025556-T1 | |
OS493_025557-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_025558-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_025559-T1 | INTELECTIN |
OS493_025567-T1 | |
OS493_025569-T1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1 |
OS493_025570-T1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15 |
OS493_025571-T1 | SI:DKEY-19B23.7 |
OS493_025572-T1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO |
OS493_025573-T1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO |