Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025354-T1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
OS493_025355-T1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
OS493_025356-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025357-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025358-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025359-T1 | |
OS493_025360-T1 | |
OS493_025361-T1 | |
OS493_025362-T1 | |
OS493_025363-T1 | CXC2 DOMAIN-CONTAINING PROTEIN |
OS493_025364-T1 | |
OS493_025365-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025366-T1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
OS493_025367-T1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
OS493_025368-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_025369-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_025370-T1 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
OS493_025372-T1 | PEFLIN |
OS493_025373-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025374-T1 | |
OS493_025375-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025376-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025377-T1 | |
OS493_025378-T1 | |
OS493_025379-T1 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER |
OS493_025380-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_025381-T1 | REGULATORY PROTEIN ZESTE |
OS493_025382-T1 | |
OS493_025383-T1 | |
OS493_025384-T1 | L1 TRANSPOSABLE ELEMENT-RELATED |
OS493_025385-T1 | |
OS493_025387-T1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
OS493_025388-T1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
OS493_025389-T1 | CENTROMERE PROTEIN E |
OS493_025390-T1 | |
OS493_025391-T1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
OS493_025392-T1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
OS493_025393-T1 | CENTROMERE PROTEIN E |
OS493_025394-T1 | |
OS493_025395-T1 | |
OS493_025397-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_025398-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_025399-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_025400-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_025401-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_025402-T1 | |
OS493_025403-T1 | |
OS493_025404-T1 | METHYLTRANSFERASE |
OS493_025406-T1 | METHYLTRANSFERASE |
OS493_025407-T1 |