Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025408-T1 | SI:CH211-161H7.5-RELATED |
OS493_025409-T1 | DEDICATOR OF CYTOKINESIS |
OS493_025410-T1 | |
OS493_025411-T1 | DEDICATOR OF CYTOKINESIS |
OS493_025412-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_025413-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_025414-T1 | ADDUCIN |
OS493_025415-T1 | ANCIENT UBIQUITOUS PROTEIN |
OS493_025416-T1 | L-SERYL-TRNA(SEC) KINASE |
OS493_025417-T1 | VACUOLAR ATP SYNTHASE SUBUNIT H |
OS493_025418-T1 | RHOMBOID PROTEASE |
OS493_025419-T1 | |
OS493_025420-T1 | |
OS493_025421-T1 | |
OS493_025422-T1 | MOLTING PROTEIN MLT-4 |
OS493_025423-T1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
OS493_025424-T1 | STAGA COMPLEX 65 SUBUNIT GAMMA |
OS493_025425-T1 | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 |
OS493_025426-T1 | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 |
OS493_025427-T1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
OS493_025428-T1 | LEUCINE AMINOPEPTIDASE-RELATED |
OS493_025429-T1 | |
OS493_025430-T1 | TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED |
OS493_025431-T1 | UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED |
OS493_025432-T1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
OS493_025433-T1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
OS493_025434-T1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
OS493_025435-T1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
OS493_025436-T1 | |
OS493_025437-T1 | ZINC FINGER PROTEIN |
OS493_025438-T1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
OS493_025439-T1 | |
OS493_025440-T1 | METHYLTRANSFERASE |
OS493_025441-T1 | |
OS493_025442-T1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2 |
OS493_025443-T1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2 |
OS493_025444-T1 | MICROTUBULE-ASSOCIATED PROTEIN 9 |
OS493_025445-T1 | |
OS493_025446-T1 | RCC1 DOMAIN-CONTAINING PROTEIN 1 |
OS493_025447-T1 | |
OS493_025448-T1 | |
OS493_025449-T1 | BASIGIN RELATED |
OS493_025450-T1 | BASIGIN RELATED |
OS493_025451-T1 | |
OS493_025452-T1 | |
OS493_025453-T1 | ENOLASE |
OS493_025454-T1 | |
OS493_025455-T1 | ACROSIN-RELATED |
OS493_025456-T1 | TRYPTASE-RELATED |
OS493_025457-T1 |