About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_025574-T1MONOCARBOXYLATE TRANSPORTER
OS493_025576-T1
OS493_025577-T1ETS
OS493_025578-T1ETS
OS493_025579-T1ETS
OS493_025580-T1ETS
OS493_025581-T1
OS493_025582-T1
OS493_025583-T1LRP2-BINDING PROTEIN
OS493_025584-T1-
OS493_025585-T1
OS493_025586-T1HOMEOBOX PROTEIN NKX
OS493_025587-T1HOMEOBOX PROTEIN HMX
OS493_025588-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_025589-T1PHOSPHOETHANOLAMINE METHYLTRANSFERASE
OS493_025590-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_025591-T1
OS493_025592-T1
OS493_025593-T1
OS493_025594-T1
OS493_025595-T1
OS493_025596-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_025597-T1
OS493_025598-T1
OS493_025599-T1
OS493_025600-T1
OS493_025601-T1
OS493_025602-T1
OS493_025603-T1
OS493_025604-T1
OS493_025605-T1
OS493_025606-T1CD59 GLYCOPROTEIN
OS493_025607-T1GTP-BINDING PROTEIN ALPHA SUBUNIT
OS493_025608-T1CHAPERONIN
OS493_025609-T1CHAPERONIN
OS493_025610-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_025611-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_025612-T1COLLAGEN
OS493_025613-T1
OS493_025614-T1INTELECTIN
OS493_025615-T1INTELECTIN
OS493_025616-T1CELL DIVISION CYCLE 16,23,27
OS493_025617-T1
OS493_025618-T1PROTEIN TAG-278-RELATED
OS493_025619-T1
OS493_025620-T1DYNEIN INTERMEDIATE CHAIN
OS493_025621-T1
OS493_025622-T1DYNEIN INTERMEDIATE CHAIN
OS493_025623-T1
OS493_025624-T1
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