Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025458-T1 | WD40 REPEAT PF20 |
OS493_025459-T1 | |
OS493_025460-T1 | CONDENSIN COMPLEX SUBUNIT 2 |
OS493_025461-T1 | FUKUTIN RELATED PROTEIN |
OS493_025462-T1 | FUKUTIN RELATED PROTEIN |
OS493_025463-T1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
OS493_025464-T1 | |
OS493_025465-T1 | FUKUTIN RELATED PROTEIN |
OS493_025466-T1 | |
OS493_025467-T1 | FUKUTIN RELATED PROTEIN |
OS493_025468-T1 | ZNF44 PROTEIN |
OS493_025469-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 17 |
OS493_025470-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
OS493_025471-T1 | GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88 |
OS493_025472-T1 | |
OS493_025473-T1 | GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88 |
OS493_025474-T1 | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED |
OS493_025475-T1 | |
OS493_025476-T1 | |
OS493_025477-T1 | |
OS493_025478-T1 | |
OS493_025479-T1 | |
OS493_025480-T1 | |
OS493_025481-T1 | BONUS, ISOFORM C-RELATED |
OS493_025482-T1 | PROTEIN PBDC1 |
OS493_025483-T1 | |
OS493_025484-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_025486-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_025487-T1 | ARYLSULFATASE |
OS493_025488-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_025489-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_025490-T1 | COMPLEMENT COMPONENT C6 |
OS493_025491-T1 | PENTRAXIN |
OS493_025492-T1 | |
OS493_025493-T1 | PENTRAXIN |
OS493_025495-T1 | PENTRAXIN |
OS493_025496-T1 | PENTRAXIN |
OS493_025497-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_025498-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_025499-T1 | |
OS493_025500-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_025501-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_025502-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_025503-T1 | |
OS493_025504-T1 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE |
OS493_025505-T1 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE |
OS493_025506-T1 | |
OS493_025507-T1 | X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1 |
OS493_025508-T1 | X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1 |
OS493_025509-T1 | GLUTATHIONE PEROXIDASE |