About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_025458-T1WD40 REPEAT PF20
OS493_025459-T1
OS493_025460-T1CONDENSIN COMPLEX SUBUNIT 2
OS493_025461-T1FUKUTIN RELATED PROTEIN
OS493_025462-T1FUKUTIN RELATED PROTEIN
OS493_025463-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
OS493_025464-T1
OS493_025465-T1FUKUTIN RELATED PROTEIN
OS493_025466-T1
OS493_025467-T1FUKUTIN RELATED PROTEIN
OS493_025468-T1ZNF44 PROTEIN
OS493_025469-T1DDB1- AND CUL4-ASSOCIATED FACTOR 17
OS493_025470-T1SMALL NUCLEAR RIBONUCLEOPROTEIN
OS493_025471-T1GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88
OS493_025472-T1
OS493_025473-T1GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88
OS493_025474-T1TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED
OS493_025475-T1
OS493_025476-T1
OS493_025477-T1
OS493_025478-T1
OS493_025479-T1
OS493_025480-T1
OS493_025481-T1BONUS, ISOFORM C-RELATED
OS493_025482-T1PROTEIN PBDC1
OS493_025483-T1
OS493_025484-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_025486-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_025487-T1ARYLSULFATASE
OS493_025488-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_025489-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_025490-T1COMPLEMENT COMPONENT C6
OS493_025491-T1PENTRAXIN
OS493_025492-T1
OS493_025493-T1PENTRAXIN
OS493_025495-T1PENTRAXIN
OS493_025496-T1PENTRAXIN
OS493_025497-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_025498-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_025499-T1
OS493_025500-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_025501-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_025502-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_025503-T1
OS493_025504-T1UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE
OS493_025505-T1UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE
OS493_025506-T1
OS493_025507-T1X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1
OS493_025508-T1X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1
OS493_025509-T1GLUTATHIONE PEROXIDASE
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