Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025142-T1 | ARYLSULFATASE |
OS493_025143-T1 | ARYLSULFATASE |
OS493_025144-T1 | ARYLSULFATASE |
OS493_025145-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
OS493_025146-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
OS493_025147-T1 | |
OS493_025148-T1 | ARYLSULFATASE |
OS493_025149-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_025150-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_025151-T1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
OS493_025152-T1 | |
OS493_025153-T1 | |
OS493_025154-T1 | |
OS493_025156-T1 | UNCHARACTERIZED |
OS493_025157-T1 | UNCHARACTERIZED |
OS493_025158-T1 | UNCHARACTERIZED |
OS493_025159-T1 | ANTHRAX TOXIN RECEPTOR |
OS493_025160-T1 | |
OS493_025162-T1 | |
OS493_025163-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
OS493_025164-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
OS493_025165-T1 | ETS |
OS493_025166-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
OS493_025168-T1 | |
OS493_025169-T1 | ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 |
OS493_025170-T1 | CGI-141-RELATED/LIPASE CONTAINING PROTEIN |
OS493_025171-T1 | |
OS493_025172-T1 | HIV-1 REV BINDING PROTEIN 2, 3 |
OS493_025173-T1 | |
OS493_025174-T1 | TUMOR PROTEIN P53-INDUCIBLE PROTEIN 11 |
OS493_025175-T1 | FACIOGENITAL DYSPLASIA PROTEIN |
OS493_025176-T1 | RING FINGER PROTEIN 141-RELATED |
OS493_025177-T1 | |
OS493_025178-T1 | RETICULOCALBIN |
OS493_025179-T1 | RETICULOCALBIN |
OS493_025180-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_025181-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
OS493_025182-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
OS493_025183-T1 | |
OS493_025184-T1 | SODIUM/HYDROGEN EXCHANGER |
OS493_025185-T1 | SODIUM/HYDROGEN EXCHANGER |
OS493_025187-T1 | |
OS493_025189-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_025190-T1 | |
OS493_025191-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_025192-T1 | |
OS493_025193-T1 | TRANSMEMBRANE PROTEIN 117 |
OS493_025194-T1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 |
OS493_025195-T1 | N-ACETYLTRANSFERASE 10 |
OS493_025196-T1 | N-ACETYLTRANSFERASE 10 |