About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024927-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_024928-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_024929-T1
OS493_024931-T1
OS493_024932-T1
OS493_024933-T1ELONGATION FACTOR TU-RELATED
OS493_024934-T1
OS493_024935-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_024936-T1OS05G0114600 PROTEIN
OS493_024937-T1
OS493_024938-T1
OS493_024939-T1CB1 CANNABINOID RECEPTOR-INTERACTING PROTEIN 1
OS493_024941-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_024942-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_024943-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_024944-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_024945-T1WD REPEAT DOMAIN 62, ISOFORM G
OS493_024946-T1
OS493_024947-T1PROTEIN, PUTATIVE-RELATED
OS493_024948-T1PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE
OS493_024949-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_024950-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_024951-T1SERINE/THREONINE PROTEIN PHOSPHATASE
OS493_024952-T1GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1
OS493_024953-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_024954-T1ELONGATION FACTOR TU-RELATED
OS493_024955-T1ELONGATION FACTOR TU-RELATED
OS493_024956-T1BEN DOMAIN-CONTAINING PROTEIN 3
OS493_024957-T1
OS493_024958-T1
OS493_024959-T1
OS493_024963-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_024964-T1CALPONIN
OS493_024965-T1
OS493_024966-T1GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
OS493_024967-T1
OS493_024968-T1PROTEASE U48 CAAX PRENYL PROTEASE RCE1
OS493_024969-T1
OS493_024970-T1
OS493_024971-T1COLLAGEN ALPHA
OS493_024972-T1COLLAGEN ALPHA
OS493_024973-T1
OS493_024974-T1
OS493_024975-T1
OS493_024976-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_024977-T1
OS493_024978-T1
OS493_024979-T1
OS493_024980-T1UNCHARACTERIZED
OS493_024981-T1UNCHARACTERIZED
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