Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024927-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
OS493_024928-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
OS493_024929-T1 | |
OS493_024931-T1 | |
OS493_024932-T1 | |
OS493_024933-T1 | ELONGATION FACTOR TU-RELATED |
OS493_024934-T1 | |
OS493_024935-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_024936-T1 | OS05G0114600 PROTEIN |
OS493_024937-T1 | |
OS493_024938-T1 | |
OS493_024939-T1 | CB1 CANNABINOID RECEPTOR-INTERACTING PROTEIN 1 |
OS493_024941-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_024942-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_024943-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_024944-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_024945-T1 | WD REPEAT DOMAIN 62, ISOFORM G |
OS493_024946-T1 | |
OS493_024947-T1 | PROTEIN, PUTATIVE-RELATED |
OS493_024948-T1 | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE |
OS493_024949-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_024950-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_024951-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
OS493_024952-T1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1 |
OS493_024953-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_024954-T1 | ELONGATION FACTOR TU-RELATED |
OS493_024955-T1 | ELONGATION FACTOR TU-RELATED |
OS493_024956-T1 | BEN DOMAIN-CONTAINING PROTEIN 3 |
OS493_024957-T1 | |
OS493_024958-T1 | |
OS493_024959-T1 | |
OS493_024963-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
OS493_024964-T1 | CALPONIN |
OS493_024965-T1 | |
OS493_024966-T1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
OS493_024967-T1 | |
OS493_024968-T1 | PROTEASE U48 CAAX PRENYL PROTEASE RCE1 |
OS493_024969-T1 | |
OS493_024970-T1 | |
OS493_024971-T1 | COLLAGEN ALPHA |
OS493_024972-T1 | COLLAGEN ALPHA |
OS493_024973-T1 | |
OS493_024974-T1 | |
OS493_024975-T1 | |
OS493_024976-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_024977-T1 | |
OS493_024978-T1 | |
OS493_024979-T1 | |
OS493_024980-T1 | UNCHARACTERIZED |
OS493_024981-T1 | UNCHARACTERIZED |