Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024669-T1 | |
OS493_024670-T1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
OS493_024671-T1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
OS493_024672-T1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
OS493_024675-T1 | RNA-BINDING PROTEIN NOB1 |
OS493_024676-T1 | PROTEASE M14 CARBOXYPEPTIDASE |
OS493_024677-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_024678-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_024679-T1 | |
OS493_024680-T1 | |
OS493_024681-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_024682-T1 | |
OS493_024683-T1 | - |
OS493_024684-T1 | - |
OS493_024685-T1 | |
OS493_024686-T1 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
OS493_024687-T1 | OS05G0300700 PROTEIN |
OS493_024688-T1 | PROTEASOME ASSEMBLY CHAPERONE 2 |
OS493_024689-T1 | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED |
OS493_024690-T1 | |
OS493_024691-T1 | |
OS493_024692-T1 | SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED |
OS493_024693-T1 | SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED |
OS493_024694-T1 | DYNACTIN 6 |
OS493_024695-T1 | CAMK FAMILY PROTEIN KINASE |
OS493_024696-T1 | SI:CH211-108C17.2-RELATED-RELATED |
OS493_024697-T1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
OS493_024698-T1 | IRON-SULFUR DOMAIN CONTAINING PROTEIN |
OS493_024699-T1 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
OS493_024700-T1 | MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT |
OS493_024701-T1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
OS493_024702-T1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
OS493_024703-T1 | BAND 7 PROTEIN-RELATED |
OS493_024704-T1 | CT120 PROTEIN |
OS493_024705-T1 | |
OS493_024706-T1 | |
OS493_024707-T1 | |
OS493_024708-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_024709-T1 | LD33804P |
OS493_024710-T1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
OS493_024711-T1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 |
OS493_024712-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_024713-T1 | T-BOX PROTEIN-RELATED |
OS493_024714-T1 | UNCHARACTERIZED |
OS493_024715-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
OS493_024716-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_024717-T1 | |
OS493_024718-T1 | |
OS493_024719-T1 | |
OS493_024720-T1 |