About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009904-T1RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED
OS493_009905-T1-
OS493_009906-T1PALMITOYLTRANSFERASE ZDHHC16
OS493_009907-T1G-PROTEIN COUPLED RECEPTOR
OS493_009908-T1ANOCTAMIN
OS493_009909-T1NUCLEAR HORMONE RECEPTOR
OS493_009910-T1NUCLEAR HORMONE RECEPTOR
OS493_009911-T1DDB1- AND CUL4-ASSOCIATED FACTOR 11
OS493_009912-T1ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4
OS493_009913-T1PEFLIN
OS493_009914-T1PEFLIN
OS493_009915-T1MOLTING PROTEIN MLT-4
OS493_009916-T1UNCHARACTERIZED
OS493_009917-T1-
OS493_009918-T1TRNA THREONYLCARBAMOYLADENOSINE DEHYDRATASE
OS493_009921-T1SYNTAXIN
OS493_009922-T1-
OS493_009923-T1AMINO ACID TRANSPORTER
OS493_009924-T1AMINO ACID TRANSPORTER
OS493_009925-T1AMINO ACID TRANSPORTER
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