About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024341-T1
OS493_024342-T1
OS493_024343-T1LEUCOKININ RECEPTOR-RELATED
OS493_024344-T1LEUCOKININ RECEPTOR-RELATED
OS493_024346-T1TRYPSIN-RELATED
OS493_024347-T1OVOCHYMASE-RELATED
OS493_024348-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_024349-T1
OS493_024350-T1FRIZZLED
OS493_024351-T1FRIZZLED
OS493_024352-T1ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
OS493_024353-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
OS493_024354-T1
OS493_024355-T1
OS493_024356-T1
OS493_024357-T1
OS493_024359-T1TRANSFORMER-2-RELATED
OS493_024360-T1TRANSFORMER-2-RELATED
OS493_024361-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_024362-T1GABA-B RECEPTOR
OS493_024363-T1SERINE/THREONINE-PROTEIN KINASE
OS493_024364-T1SERINE/THREONINE-PROTEIN KINASE
OS493_024365-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_024366-T1
OS493_024367-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_024368-T1
OS493_024369-T1
OS493_024370-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024371-T1
OS493_024372-T1OVOCHYMASE-RELATED
OS493_024373-T1OVOCHYMASE-RELATED
OS493_024374-T1
OS493_024375-T1
OS493_024376-T1FAS-ASSOCIATED PROTEIN
OS493_024377-T1PUR-TRANSCRIPTIONAL ACTIVATOR
OS493_024378-T1
OS493_024379-T1
OS493_024380-T1RHO GUANINE EXCHANGE FACTOR-RELATED
OS493_024381-T1ACTIN
OS493_024382-T1ACTIN
OS493_024383-T1FUKUTIN RELATED PROTEIN
OS493_024384-T1ION_TRANS DOMAIN-CONTAINING PROTEIN
OS493_024385-T1
OS493_024386-T1
OS493_024387-T1
OS493_024388-T1NUCLEOTIDE KINASE
OS493_024389-T1GPI MANNOSYLTRANSFERASE 2
OS493_024393-T1
OS493_024394-T1AQUAPORIN OR AQUAGLYCEROPORIN RELATED
OS493_024395-T1VACUOLAR PROTEIN SORTING 26 RELATED
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