Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024072-T1 | |
OS493_024073-T1 | BLR6086 PROTEIN |
OS493_024074-T1 | BLR6086 PROTEIN |
OS493_024075-T1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
OS493_024076-T1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
OS493_024077-T1 | |
OS493_024078-T1 | SI:CH211-243P7.3-RELATED |
OS493_024079-T1 | |
OS493_024080-T1 | |
OS493_024081-T1 | |
OS493_024082-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_024083-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_024084-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_024085-T1 | |
OS493_024086-T1 | UNNAMED PRODUCT |
OS493_024087-T1 | UNCHARACTERIZED |
OS493_024088-T1 | |
OS493_024089-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_024090-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_024093-T1 | EXPRESSED PROTEIN |
OS493_024094-T1 | |
OS493_024095-T1 | |
OS493_024096-T1 | |
OS493_024097-T1 | |
OS493_024098-T1 | |
OS493_024099-T1 | |
OS493_024100-T1 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
OS493_024101-T1 | |
OS493_024102-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_024103-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_024104-T1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
OS493_024106-T1 | BLR6086 PROTEIN |
OS493_024107-T1 | BLR6086 PROTEIN |
OS493_024108-T1 | BLR6086 PROTEIN |
OS493_024109-T1 | |
OS493_024110-T1 | SI:CH211-243P7.3-RELATED |
OS493_024111-T1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
OS493_024112-T1 | |
OS493_024113-T1 | |
OS493_024116-T1 | |
OS493_024117-T1 | |
OS493_024118-T1 | AMMECR1 HOMOLOG |
OS493_024119-T1 | CARBONIC ANHYDRASE |
OS493_024120-T1 | |
OS493_024121-T1 | |
OS493_024122-T1 | |
OS493_024123-T1 | G PATCH DOMAIN-CONTAINING PROTEIN 1 |
OS493_024124-T1 | DYNEIN REGULATORY COMPLEX PROTEIN 9 |
OS493_024125-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_024128-T1 |