About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009573-T1MALE FERTILITY FACTOR KL5
OS493_009574-T1PLASMINOGEN-RELATED
OS493_009576-T1INOSITOL 5-PHOSPHATASE
OS493_009577-T1WD REPEAT AND COILED-COIL-CONTAINING PROTEIN
OS493_009578-T1-
OS493_009579-T1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
OS493_009580-T1-
OS493_009582-T1ALDO/KETO REDUCTASE
OS493_009583-T1ALDO/KETO REDUCTASE
OS493_009584-T1SERINE/THREONINE-PROTEIN KINASE ATM
OS493_009585-T1-
OS493_009586-T1SERINE/THREONINE-PROTEIN KINASE ATM
OS493_009587-T1-
OS493_009588-T1-
OS493_009589-T1MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
OS493_009590-T1-
OS493_009591-T1SPLICING FACTOR SF3A-RELATED
OS493_009592-T1LISH DOMAIN-CONTAINING PROTEIN ARMC9
OS493_009593-T1MICROTUBULE-ASSOCIATED PROTEIN
OS493_009594-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
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