Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_023526-T1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
OS493_023527-T1 | INTEGRIN BETA SUBUNIT |
OS493_023528-T1 | |
OS493_023529-T1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
OS493_023530-T1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
OS493_023532-T1 | RUN AND SH3 DOMAIN CONTAINING |
OS493_023533-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
OS493_023534-T1 | |
OS493_023535-T1 | FORKHEAD BOX PROTEIN |
OS493_023536-T1 | FORKHEAD BOX PROTEIN |
OS493_023537-T1 | MYOSIN |
OS493_023538-T1 | |
OS493_023539-T1 | |
OS493_023540-T1 | |
OS493_023541-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
OS493_023542-T1 | |
OS493_023543-T1 | ANAPHASE-PROMOTING COMPLEX 10 |
OS493_023544-T1 | ENDONUCLEASE V |
OS493_023545-T1 | DYNEIN LIGHT CHAIN |
OS493_023546-T1 | MELANOCYTE PROTEIN PMEL 17-RELATED |
OS493_023547-T1 | |
OS493_023548-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_023549-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_023550-T1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
OS493_023551-T1 | |
OS493_023552-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY |
OS493_023553-T1 | N-TERMINAL ASPARAGINE AMIDOHYDROLASE |
OS493_023554-T1 | N-TERMINAL ASPARAGINE AMIDOHYDROLASE |
OS493_023555-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023556-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023557-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023558-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023559-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023560-T1 | |
OS493_023561-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023562-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_023563-T1 | |
OS493_023564-T1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
OS493_023565-T1 | U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11 |
OS493_023566-T1 | |
OS493_023567-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023568-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023569-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_023570-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023571-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023572-T1 | INTELECTIN |
OS493_023574-T1 | |
OS493_023575-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023576-T1 | |
OS493_023577-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |