About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

<< First 427 428 429 430 431 432 433 434 435 436 Forward> Last>>        750 pages in total

Gene IDDescription
OS493_023246-T1
OS493_023247-T1
OS493_023248-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_023249-T1
OS493_023251-T1ANTERIOR GRADIENT PROTEIN-RELATED
OS493_023253-T1NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
OS493_023254-T1SOLUTE CARRIER FAMILY 35 MEMBER B
OS493_023255-T1
OS493_023256-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_023257-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_023258-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_023259-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_023260-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_023261-T1MYOSIN REGULATORY LIGHT CHAIN 2
OS493_023262-T1MYOSIN LIGHT CHAIN 1, 3
OS493_023264-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_023265-T1OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
OS493_023266-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_023267-T1OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
OS493_023268-T12-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE PYROPHOSPHOKINASE
OS493_023269-T1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
OS493_023270-T1
OS493_023271-T1
OS493_023272-T1
OS493_023273-T1GLUTATHIONE S-TRANSFERASE
OS493_023274-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_023276-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_023277-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_023279-T1AVIDIN-RELATED
OS493_023280-T1CGI-140
OS493_023281-T1SEMINAL PLASMA PROTEIN
OS493_023282-T1COLLAGEN ALPHA
OS493_023283-T1UNCHARACTERIZED
OS493_023284-T1
OS493_023286-T1
OS493_023287-T1
OS493_023288-T1
OS493_023293-T1
OS493_023294-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
OS493_023295-T1
OS493_023296-T1GUANINE NUCLEOTIDE EXCHANGE C9ORF72
OS493_023297-T1GUANINE NUCLEOTIDE EXCHANGE C9ORF72
OS493_023298-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_023299-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_023300-T1
OS493_023301-T1
OS493_023302-T1
OS493_023303-T1
OS493_023304-T1
OS493_023305-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
TOP